Hippocampus comes (tiger tail seahorse): 109519856
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Entry
109519856 CDS
T04969
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
hcq
Hippocampus comes (tiger tail seahorse)
Pathway
hcq03030
DNA replication
hcq03410
Base excision repair
hcq03420
Nucleotide excision repair
hcq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hcq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
109519856 (rfc1)
03410 Base excision repair
109519856 (rfc1)
03420 Nucleotide excision repair
109519856 (rfc1)
03430 Mismatch repair
109519856 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hcq03032
]
109519856 (rfc1)
03400 DNA repair and recombination proteins [BR:
hcq03400
]
109519856 (rfc1)
DNA replication proteins [BR:
hcq03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
109519856 (rfc1)
DNA repair and recombination proteins [BR:
hcq03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
109519856 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_30
AAA_5
AAA_17
AAA_19
RuvB_N
Rad17
AAA_14
AAA_33
AAA_18
BRCT_2
AAA_16
AAA_7
nSTAND3
NTPase_1
RNA_helicase
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
109519856
NCBI-ProteinID:
XP_019732229
LinkDB
All DBs
Position
Unknown
AA seq
1166 aa
AA seq
DB search
MDIRRFFAPSAQKATPNGNASTKRNPFSSEEELKKKETKIKKQETDVKRMHDKKRKKHAV
IQSDSDSEDRDTKSKKSPKKKQKISNAAQSLKKEPVHCVLEKDSDSDNFESLKKKSSISK
QNGTSQKSRSSPGLKDAAESSIKSSSVHSKNGAKCPTTPVTPKTAPPPQAKQTPTSVLDY
FGNESIQRSGKKLVASTKRKTPIQDTDEMSDEQIARQLQMVEDDELEKQIHEDEDFARTL
AMLDAEPQAKKVRKSSDEKNVEAFHRKRNSLSPSKNNREDSMSEDMIGPSPKKNPAPLKP
SSKLGMLKKRDEEKDNATKSKAQTKMKISPKKEPFTLSGSEKVQASKRGTGLETSPTEPA
STRPDEAEKKKLNTSAYRNYLNRDGPRALGSREIPTGADNCLEGCVFVLTGVLESMERDE
TKSLIERYGGKVTGNVSKKTTYLVQGRDSGVSKLEKAESFGTKILNEDDLFELIRTKPGK
KSKYEIAAEAESKASKTRTPPGSAPKTRTPPGSAPKTTPKASKISPSKGNSKSPHSPSPS
KTAQTTGRSAKTMDGGTPPGRGSAQTARRELGLSSQNFTSSASKLKSVNEDGATLLWVDK
YRPCSLKAVIGQQGEQSCANKLLRWLQNWYTHHSSAASKPPVARFGKFAAGKDDGSGYKA
ALLSGPPGVGKTTTAALVCEELGFSYVEMNASCTRSKNNLKDVVAESLNNTSIESFYKGT
SRKVSTKHVLIMDEVDGMAGNEDRGGMQELISLIKNSKIPIICMCNDRNHQKIRSLANYC
FDLRFQRPRMEQIKGAMMSIAFKEGIKIPPPALNEIILASNQDIRQVIHNLSMWSAKDKV
MTYDQCKSDAASARKDLKMGPFDVCRKVFAAGEETAHMSLIDKSDLFFHDYSLAPLFVQE
NYLHVRPAAAGGNAKSHLVLLSKTADSISDGDLVDRRIRSGQNWSLLPTQAIYASVIPGE
LMRGYMSHFPSFPSWLGKNSSAGKHSRIVQELASHMALKTMSSRQAVNLDYLYFLRQALL
SPLQKLAAEGASEAVRLLDDYQLIREDMDNMMEIGSWGGQPDPYSKLDSKVKAAFTRTYN
KEVHLTPYSLQAIKKGRRGGAEESELEVQDTEKDTPVSEDEGESLSVDAMIKQKKAKAVT
KESKKEKTEDSGKGKGKGKGKAKAKK
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atggacattcggagattctttgcgccatcagcacagaaagcgactcctaatggaaacgcg
agcacgaagaggaatcctttttcttcagaggaagagttgaaaaagaaagagaccaagatt
aaaaaacaagaaacagacgtgaaacgtatgcatgacaaaaaacggaaaaaacatgcagtc
atacaatcagactctgactcagaggatcgagacacgaaatccaagaaatctcctaagaag
aagcagaagatcagcaatgctgcacagtctctcaagaaagagcctgttcactgcgtcttg
gaaaaagactcagacagtgacaactttgagtccttgaagaaaaagtcctccataagcaag
caaaatggcacctcccaaaagagcaggtcaagtccaggtctgaaagatgctgcagagtct
tcaatcaagtcgtcctctgttcactcgaaaaatggagccaaatgtcccaccacaccagtc
acaccaaagacggcgccaccccctcaggccaaacaaacccccacctctgtgttggactac
ttcggcaacgaaagcatccagcgctcgggcaagaagctggtcgccagcacaaaacgaaag
actccaatccaggataccgatgaaatgagcgatgaacaaatagctcgacagctgcaaatg
gttgaggatgatgagctggagaagcagattcatgaagatgaagactttgccagaacactt
gccatgctggatgcagagccacaggcaaagaaggttcgtaaaagctcggatgaaaaaaat
gtggaggcattccacagaaagaggaattcactcagcccttcaaagaacaacagagaggac
agcatgtcagaggacatgattggtccttcacccaagaaaaaccctgctccactcaaaccc
agttccaaactagggatgttgaagaaaagagacgaggaaaaagataacgcgacaaagagc
aaagcacagacaaaaatgaaaatctctcccaaaaaggagccatttaccctgtcagggagt
gaaaaggtgcaggcatccaaaagagggactggacttgaaacttctcccactgaaccagcg
agcaccagacctgacgaggcagagaagaagaaactcaacacttccgcttacaggaattac
ctgaacagagatggaccaagagcactgggctccagagaaatccccacgggtgcagataac
tgtttggagggttgcgtgtttgtattgacgggcgttctggaatcaatggaaagagatgag
accaaatccctgatcgagcgctacggcggaaaagtgacgggcaacgtcagcaagaagacc
acctacctggtgcagggtcgggacagcggcgtctccaagctcgagaaggcggagagtttt
gggaccaaaatccttaatgaggatgacctgtttgagctaattaggaccaaaccagggaag
aagtccaagtatgagattgctgcagaggccgagagcaaagcttcaaagaccaggactcct
ccgggctcggccccaaagaccaggactccacccggctcggccccaaagaccactcctaaa
gcttcaaagatctctccctccaaaggcaactccaagtcccctcactctccaagtccctca
aagactgcgcagacaaccggccgtagtgccaaaaccatggatggcggaaccccgcccgga
agaggctcagctcaaactgctcgcagggaattgggactttcttctcagaacttcacctct
tcagcctcaaaattgaaatcggtaaatgaggacggtgccactctgctgtgggtggacaaa
taccgcccgtgttctctgaaggctgtgataggccagcaaggggaacagagctgcgccaac
aagcttctccgctggctgcaaaactggtacacgcatcatagcagcgctgcctccaaacca
ccagttgccagatttggaaagtttgctgcaggaaaagatgacggatcaggttacaaagct
gctctactctccggaccgccgggtgtggggaagaccactacagcggccctggtctgcgag
gagttgggctttagctatgtggaaatgaatgcaagttgcacacgcagcaaaaacaacctg
aaggacgtggtcgcagagtccctcaacaacaccagcatcgaaagcttttacaaaggcacg
tcccgtaaagtcagcaccaagcacgtcttgatcatggatgaggttgatggcatggcgggc
aatgaggatcggggcggtatgcaggaattgatcagcctcatcaaaaattccaagattccc
atcatctgcatgtgcaacgatcggaaccatcagaagatcagatcactggccaattactgc
tttgatctgcgcttccagaggccgcgaatggaacagatcaagggtgctatgatgtccatc
gctttcaaggaaggaatcaagattccgcctccggcacttaatgaaattatcttggcgtcc
aatcaagacatcagacaggtgatccataacctcagcatgtggtcagctaaagacaaggtg
atgacctacgaccagtgcaagtctgacgcagccagcgcccgcaaggacctgaaaatgggg
ccctttgacgtctgccgaaaggtgtttgcggctggcgaggagacggcccacatgagtctc
attgacaagtcggatctcttcttccacgactactcgctagcgcccctctttgtccaggag
aattatctacacgtgcggcctgccgctgctgggggcaatgcaaagtctcaccttgtgctg
ctcagcaagacggctgactccatcagtgatggagacctggtggaccgacgaatccgctct
gggcagaactggtctctgctacccacgcaggctatctatgccagtgtaatcccaggtgag
ctcatgagaggttacatgagtcatttcccgtcgttcccaagctggcttggcaaaaactcg
tcggcaggcaaacattcccgcatcgtccaggagctggcctcccacatggctttgaagact
atgagcagcagacaagcggtgaacctggactacctctacttcctgcggcaggccctactc
agcccactccagaagctggcagccgagggcgccagtgaggctgtgcggctactggacgat
taccagctcatcagggaggacatggataacatgatggagattggttcatggggcggacaa
cctgacccctactccaaactggactccaaggtgaaagcggcattcacgaggacgtacaac
aaggaggtccatctgacaccgtactccctgcaagctatcaagaaggggcggcgcggcggc
gccgaagagtctgaactggaagtgcaggacaccgagaaggacaccccagtgtctgaggat
gaaggagagagcctcagtgtggatgccatgatcaaacagaagaaggccaaagccgtcacc
aaggaatctaagaaggaaaagactgaggattctgggaaggggaaggggaagggaaaaggc
aaggctaaggctaaaaagtga
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