Hippocampus comes (tiger tail seahorse): 109519970
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Entry
109519970 CDS
T04969
Symbol
sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
hcq
Hippocampus comes (tiger tail seahorse)
Pathway
hcq03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hcq00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109519970 (sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hcq03041
]
109519970 (sf3b1)
03036 Chromosome and associated proteins [BR:
hcq03036
]
109519970 (sf3b1)
Spliceosome [BR:
hcq03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
109519970 (sf3b1)
Complex B
109519970 (sf3b1)
Complex C
U2 SnRNP specific factors
109519970 (sf3b1)
Chromosome and associated proteins [BR:
hcq03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
109519970 (sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
GST_N_4
DUF2298
DUF5870
Motif
Other DBs
NCBI-GeneID:
109519970
NCBI-ProteinID:
XP_019732419
UniProt:
A0A3Q2Z3H3
LinkDB
All DBs
Position
Unknown
AA seq
1322 aa
AA seq
DB search
MAKIAKTHDDIEAQILEIQGMKANLVEEGDEQGVGLVSTGFFDQEIYGGSDSRFAGYVTS
IAANEQEDDDEEETATSLLGQKKQGYHAPVAILNAIPQSDEQYDPFAEHRPQKIADREDE
YKTRRMQMIISPERLDPFADGGKTPDPKLQVRSYVDVMREQNLSKEEREIRLQLAEKAKS
GDLKVVNGSAASQAAAAAAAAAAKRKRRWDQTADQTPTNSTPKKMSSWDQADANAETPGH
TPAHTPSNSRWDETPGRPKGSETPGATPSSRMWDPTPSHTPAGAATPGRDTPGHATPGHG
GATGSVRKNRWDETPKTERETPGHGSGWAETPRTDRGDESVGETPTPGASKRKSRWDETP
ASQMGSSTPLLTPGKTPIGTPAMNMATPTPGHLMSMTPEQLQAWRWEREIDERNRPLTDD
ELDAMFPEGYKVLPPPAGYVPIRTPARKLSATPTPIGGMTGFHMQVEDRTTKQMNDQPSG
NLPFLKPDDIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDK
AREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLL
IDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIP
SLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVR
TISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYA
NYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHR
MALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAA
DIDHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNN
KSAKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVN
VIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFEL
LELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAET
CSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDL
VHRQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIG
PCRMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPQVYNDEKNMYIRYELDY
VL
NT seq
3969 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaaaacccacgacgatatcgaggcccagatcctggagatccagggg
atgaaggccaatctggtggaggaaggagatgagcagggagtcgggcttgtttcaactggg
ttttttgatcaagaaatctacggaggaagcgacagtcgttttgctggctatgtcacatcc
atcgccgccaacgaacaggaagacgatgatgaagaggaaactgcgacgagtttgttgggt
cagaaaaagcaagggtaccacgctccagtggccattctcaatgccattcctcagtcagac
gaacaatatgatccatttgcggagcatcgtccacagaagattgcagaccgggaggacgag
tacaaaactcggcgcatgcagatgattatctcgccggagcgcctcgacccctttgcagat
ggaggcaaaactccggatcccaagctccaggtcaggtcttatgtggacgtcatgagagag
cagaatctgtccaaggaagagagagagattcgtctgcagctcgcagagaaggccaagtca
ggtgacctgaaagttgtcaatgggtccgctgccagccaagctgctgctgccgccgccgcc
gctgcagctaaacgcaagcgccgctgggaccagacggctgaccaaacccctaccaattct
acccccaaaaagatgtccagctgggaccaggctgatgccaatgctgagactccgggacac
acgccagcgcatacaccatcaaacagccgatgggacgaaacccccggccgtcccaaaggc
agcgagacccccggggcaacacccagctcgcgcatgtgggacccaacacccagtcacaca
ccggccggcgcagccacaccaggcagagacacaccaggacatgccacaccgggccacggc
ggagcgactggaagcgtccggaagaaccgctgggacgaaaccccaaagacggaaagggag
acgcccggacacgggagcggctgggctgaaaccccgcgtacagacaggggggatgagtct
gtgggggagactcccactccaggagccagcaagaggaaatctcgctgggatgaaacaccg
gctagtcaaatgggctcctcaacaccactgctgacccctggaaagacccctattgggacc
cctgccatgaatatggcaaccccaacacccggtcacctgatgagcatgactccagagcag
ctgcaagcatggaggtgggagcgggagatcgacgagagaaaccggcctctcacagacgac
gagcttgatgccatgtttcctgaaggatacaaggtgttgcctccaccagctggctatgtg
ccaatccgcacgccagcccgcaagctctcggcaacgcctaccccaattggtggcatgaca
ggcttccacatgcaagtggaggaccgcaccaccaagcagatgaatgaccaaccctctgga
aacctccccttcctcaaaccggatgacatccagtattttgacaaactgctggttgaggtg
gatgagtccacattgagccctgaagaacagaaggaaagaaagatcatgaagctgctgctg
aagattaaaaatggaactccacccatgagaaaggcggcccttcgtcagatcacagacaaa
gctcgcgagttcggagcaggacctctgttcaaccagatcctcccactgctcatgtccccc
acccttgaggaccaagaacgccacttgctggtgaaagtcatcgaccgtattctctacaaa
cttgacgaccttgttcgaccctacgtacacaagatcctggtggtgattgagcccttgctc
attgatgaggactactacgccagagtcgaaggcagagagatcatttccaacttggcaaag
gcggctggattggcaaccatgatctccaccatgcgtcccgacatcgacaacatggatgag
tacgtgagaaacaccactgcaagggccttcgccgtggtggcatctgccctcggcatcccc
tccctgctgcccttcctcaaagccgtgtgtaaaagtaagaagtcatggcaggcccggcac
accggcatcaagatcgtgcaacagatcgccatcctaatgggctgcgctatcctgcctcac
ctgcgcagtttggttgaaatcattgagcacggtctggtggatgagcaacagaaagtgagg
accatcagcgccttggccattgctgccttggccgaagccgctacaccctatggtatcgaa
tcctttgattcagtgctcaagcctctctggaagggtatccgacagcacagaggaaagggt
ttggctgccttcctcaaagctattggctacctgatccctttgatggatgccgagtacgca
aactactatacccgagaagtgatgcttatcctcatcagagagttccaatcaccagacgag
gaaatgaaaaagattgttctgaaggtggtgaagcagtgctgtggcaccgatggtgtggag
gccaactacatcaagactgagatcctgccccctttcttcaagcacttctggcagcacagg
atggctttggacagacgtaactacagacagttggtggacaccacagtagaactggccaac
aaggtgggagccgcagaaatcatctctcgcatcgtggatgacctcaaagacgaggcggag
cagtatcgtaaaatggtgatggaaaccatcgagaagattatgggcaacttgggcgccgca
gacatcgaccacaagctggaggagcagttgattgacggcatcctgtacgccttccaggag
cagaccacagaggattctgtgatgctaaacggctttggcacggtggtgaacgccctcggc
aagcgcgtcaagccctacctgcctcagatctgcggtacggtgctgtggcgtctcaacaac
aagtcggccaaagtgcgtcagcaggctgctgacctcatctcacgtaccgctgtggtcatg
aagacgtgtcaggaggagaagctcatgggtcacttgggtgtggtgctgtacgaatacctc
ggtgaagaataccctgaagtactgggcagcatcttgggagcactgaaggctattgtaaat
gttattggtatgcacaagatgactccacccatcaaagacctgctccctcgtttgactccc
atcttgaagaacagacatgagaaagtgcaggagaattgcatcgacctggtgggcaggata
gcagacaggggtgccgagtatgtgtcagccagagagtggatgaggatttgctttgagttg
ctggagcttctcaaggctcacaaaaaggccatccgcagagccactgtcaacacatttggc
tacattgccaaagctattggtccacacgacgtcttggccactttgctcaacaacttgaaa
gtacaggagcgtcagaaccgcgtctgcactacggtggccattgccattgtggccgagaca
tgttcccccttcaccgtcctacctgcgctcatgaacgagtaccgcgtgcctgagctcaac
gtccagaacggtgtactcaagtcgctgtctttcctgttcgagtacatcggagaaatgggc
aaggactatatctatgccgtcacgccgctcctggaggacgcgctcatggacagagatcta
gtccacaggcaaactgccagcgccgtggtccagcacatgtccctgggcgtttacggattt
ggttgcgaggactccctcaaccacttgctcaactacgtgtggcccaacgtgtttgagacg
tcgcctcatgtcatccaggctgtcatgggcgccctggaaggcctgagggtagccatcgga
ccatgccgcatgctgcagtactgcttacagggtctgttccacccggcacggaaggtgcgc
gacgtctactggaagatttacaactccatctatatcggctcccaggatgccctcattgcc
cactaccctcaagtgtacaacgacgagaagaacatgtacatccgctacgagctggactat
gtcttgtaa
DBGET
integrated database retrieval system
