KEGG   Hippocampus comes (tiger tail seahorse): 109520663
Entry
109520663         CDS       T04969                                 
Symbol
ercc8
Name
(RefSeq) DNA excision repair protein ERCC-8
  KO
K10570  DNA excision repair protein ERCC-8
Organism
hcq  Hippocampus comes (tiger tail seahorse)
Pathway
hcq03420  Nucleotide excision repair
hcq04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:hcq00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    109520663 (ercc8)
  09124 Replication and repair
   03420 Nucleotide excision repair
    109520663 (ercc8)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:hcq04121]
    109520663 (ercc8)
   03400 DNA repair and recombination proteins [BR:hcq03400]
    109520663 (ercc8)
Ubiquitin system [BR:hcq04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     109520663 (ercc8)
DNA repair and recombination proteins [BR:hcq03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      109520663 (ercc8)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz WD40_MABP1-WDR62_2nd Beta-prop_EML_2 Beta-prop_TEP1_2nd EIF3I Beta-prop_RIG_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EIPR1 Beta-prop_WDR75_1st Beta-prop_EML Beta-prop_WDR90_POC16_2nd WDR55 ANAPC4_WD40 NBCH_WD40 Beta-prop_TEP1_C WDR90_beta-prop_4th WD40_MABP1-WDR62_1st Beta-prop_IFT140_1st Beta-prop_IFT122_1st WD_LRWD1 Beta-prop_SPT8 Beta-prop_SCAP Beta-prop_Vps41 Beta-prop_WDR19_1st Beta-prop_WDR35_TULP_N Beta-prop_RIG_1st WD40_RFWD3 Beta-prop_WDR75_2nd Beta-prop_HPS5 Nucleoporin_N Beta-prop_IFT140_2nd
Other DBs
NCBI-GeneID: 109520663
NCBI-ProteinID: XP_019733589
LinkDB
Position
Unknown
AA seq 398 aa
MLGYLAARRAGLDDPLRLRRVEATRRVLSLQLNADRDMDRIHANGVNTVDIEVIEGKYML
SGGADGVIVIYDLENFSGKPQYTCKAVSTIGRSSKYAHKFSVETVQWYPYDTGMFVSSSF
DKTMKVWDTETLKPAEVFEFEDTVYSHHLSPIARKHSLIAVGTKDPKVQLCDLNSGSKIQ
VLQGHRAEVLSVRWSPRYEHILATASADSKVRVWDVRRASGCLLTLDQHNSDKSKAASEA
VNTAHNGRVNGLCFTSDGLYLITSGTDDRMRLWNSATGENTLVNYGKVSNESRKRRQFTV
SQGCSPEFVFVPCGSSVAVYGLHTGELVTMLRGHYNNVDCCEFHPDHQELYSAGKDGNIL
AWVPVLRGPDVEEESDQHATVKLSVNPAFQDAWSSDED
NT seq 1197 nt   +upstreamnt  +downstreamnt
atgttgggttacttggcagcgaggagggccggtctggatgaccctctgcgactcagacgc
gtggaggcgacgagaagggtactgagcctacagttgaatgcagacagagatatggacaga
atccacgccaatggtgtcaatactgttgatattgaagtaattgaaggcaaatacatgttg
tctggaggtgccgatggagtgattgtcatctatgacctggagaacttcagtgggaaaccg
cagtacacctgcaaggcagtctccaccatcggcagatccagcaagtatgcccacaaattc
agcgtagaaacggtccagtggtatccttatgacactggcatgtttgtatccagttccttt
gacaagacgatgaaggtgtgggacacggagactcttaagcctgctgaagtgtttgagttt
gaggacaccgtctacagccaccacctgtcgcccatcgccaggaagcacagtctcatcgca
gttggcaccaaagatcctaaagtacagctatgtgacctgaattccggttcaaagatccaa
gtcttgcagggtcaccgagcggaggtcttgtctgtgcgatggtcacccagatacgaacat
attctagccaccgccagtgctgacagcaaagtgagagtgtgggacgtgcgtcgggcgtca
ggttgcctcttgacgctggaccagcacaacagtgacaagtcaaaagctgcttctgaggca
gtaaacacggcccacaacggcagagtgaacggcttgtgcttcacaagcgatggcctttac
ctcatcacgtctgggaccgatgaccgcatgcgattgtggaacagcgccacaggggaaaac
accctggtgaactatgggaaggtgagcaacgagagccgcaagaggcgtcagttcacggtc
tcgcagggctgcagtccggaatttgtgttcgtgccatgcggtagctcagtggccgtgtac
ggcctccacacgggcgagctggtcaccatgctgcgtggtcactacaacaacgtggactgc
tgcgagttccacccggatcaccaggagttgtacagcgcaggtaaagatgggaacatcctg
gcgtgggttccggtcttgcgcggcccagatgtggaggaagagtcagatcagcatgccaca
gtgaagttgtcagtgaaccccgcgttccaggacgcgtggagcagtgatgaagattaa

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