Hippocampus comes (tiger tail seahorse): 109520677
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Entry
109520677 CDS
T04969
Symbol
vps13a
Name
(RefSeq) vacuolar protein sorting-associated protein 13A isoform X1
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
hcq
Hippocampus comes (tiger tail seahorse)
Brite
KEGG Orthology (KO) [BR:
hcq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hcq04131
]
109520677 (vps13a)
Membrane trafficking [BR:
hcq04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
109520677 (vps13a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
Motif
Other DBs
NCBI-GeneID:
109520677
NCBI-ProteinID:
XP_019733620
LinkDB
All DBs
Position
Unknown
AA seq
3272 aa
AA seq
DB search
MVFESVVVDVLNRFLGDYVVNLDSSQLQLGIWGGDVALRNLEIKENALSQLDIPFKVRAG
HIGRLELQIPWKNLYTQSVEATLDGVYLLIVPTASIKYDAEKEEKQLQEARQRELQRIEE
TKLKIAEQENPTAEKQDTFVEKLVTQIIKNVQVKISNIHIRYEDDVTNPRCPLSFGVSLS
NLSLQTCDEDWNPTVLDENARLFYKLVQLDKLFAYWNVNSVLFSNHSPDEALLCLQNSLD
LKGSHPADHDFILRPISAGAKLCMNPRSDLDFSSPKVDLMVNLSEVAIELNKPQYISILE
LLGSVDLMSRNLPYRKYRPDVFVHKNANIWWNYAITSVLEVDVKPRLHMWSWPHIQQHRK
LVKHYRELYKIKITSKKPSEELLKELQEPEKTLDIFNITLARQQAEVEVSKAGLRIYRPG
LKMEEEESQGWISWMWNWGAEPDSETKEVKSTGGGFDELLTPDEKSRLYTAIGYSETAAN
FIYPKDFEDLKGNFHMEKLSVSIKDRKDKDEIIKLTVGELISSLTQRSGAQAIKFTAELS
LFEITGQASNRPAPTLLSSKTVGTGTGTPLLSLFFETNPPDQTANQRFFAESQPLEIIYD
AMTVNAMAAFFRPPDDLQLDELTNATLIKLEQFRDRTATGLMYVIETQKVLDLKVNLLAS
YVIIPQTGFYDGTQNILLLDLGHLQMSSQSKKNLPQLSAVSSKLEDIMLRAYDSFDIQLS
NLQFLFSKPDGDWKKARMQRQSPLHILEPVDLQMEFSRAMVVKDSRMAKYKLSGQLPLLS
LRISDVKLRSVLELVDSIPLPRTNSASANTGVPPLSKPKQFTPQLSTRRHLQLTDKRSSL
IFESCETISISSLGSEEDLFYDAPSSPITGQQFFPDSPMPLRYADLNRRKGVAQEERQKN
MTDFVMTFEISEFCVQLCRLIGSCQEVTVLHLEVEGLGTELKMRTFDMTSNTYLKEICLR
CPEYTDSQNKEIQLITTLDNTEVDMLTLEYIKAEKDGPEFKSLHNNTEQLLKVTFSSLDV
NLHTEALLNTMHYLNGLMPQYTQREESEQEELHTIREEDEMDELDEGKTEGAVIAKRKTP
KNSKTTAIINLHLRADLRSLKVYIRGQQDMISEIRIEGLVFEVLMRKREMKVLANLKNFI
MFDCHETAFYKKAVSIADREVFAFQMIQHTDATEGDAYFDMSQVDTTVTLTVGCIQVIFL
NKFLSSILAFINNFQEAKEAVAEVTQQAAEKAASGVVKELSERSTRISLNVHFKAPVIFI
PQSSSSPNVLVADLGFLSVKNHFAKQPSKSYRKIPPVVDIMEVKLTDLKMYRTTFVNGVF
RGESNLLQPISLEVEIQRNLSSNWYHSIPNIEITAHLMPLSLILSQDDMVVIFRTLNENL
SENSNTVTASAPAHTEDSTADKGSRSSGNAERANSNTVVTAAVVETRKNVKLKTTLKADF
KIDSMALVLFKPNMNELLLLEPHDNELKLGEFTLGTISTSFTMYSDSSMKAAVRLATCLL
DDKRPNSKTVSPRMMAMRPGTEKNMMVEVNYRRSHEGTNLDTVVQDVYLCASMEFLLTVA
DVFLKATKQGFAETPQAKKNPVPLDKNNIPAQPGESIPSPAVAPKSEMNVVVRNPEIVFV
ADLTRADALALVMTTQCELVMKSDAESSRMTAVIQDLKVVACPFLREKRLHNVTTVLQPC
QVFFQSSQSPTSPQAMEITINSLSLKVSPIIIKTVITIQSAFNRTTETTEEIESPVPVDM
WEKRDWKDLKLWFLEEQGEASMKAAAPLIPQGESLKMDIKSICVTLEAGVGHRTVPMLLA
KSSYQGDVNNWSTLINLKSELNLEVHYYNEVVGVWEPLLEPLEDEMRDGFRPWKLEFKMK
TKPLKNIEWADEVDYNVPDYKTVILISSKDQLNVTLSKCGLAMLSNLGKAFADAAKETAG
CFQKDEAPFVVKNRLGLPVFVQYSDMFSPVATHSNDHIVELQDGQTLGMDYSVTTESDQF
SAMISLSEKDFYIQPTPAGHTSASMIPLIKVGRRMYSVMHEVSGVTRFLVCQVYSMEGSK
YIKIRSPFQIINHFSIPFKVFEGSTYLGTSLPTEEYCVPLDSYRSELSLQPVTGEDGDQF
ECSEGFSYDDINPQEPKIHIQQECLRSGNPGDVLTVNIVPVKDAVTFKDTGGIGGNFDVP
YVLHLWPCVLLRNLLPYPITYKLNDSSECETESTLNPGHSAQLHTAVINQSSLDLRLIDY
LAQDWSAQYSLCSEQEEIAFIVFESLRTEEEDYGEGMERLRAELDIAVHVKHDQGQMVVA
IHSPYWMVNKTGRLLQYKADDIHRKHPLDYEMPLLFSFKPRYFLKNNKVRLMISESELSD
DFSLDTVGSYGDVKCKGQYKDYLVGVKIDTSSFSLTRIVTFMPFYVLVNRTKQTVLICEE
GQENWTVVPPEQSAIPFWPENDAKLLKVKTESCLSPPRTINFTRPENCLLLHLDNTVGGI
IVDVNVSDHSATIRFSDYHDGAAPFLIINHTKDQTLQFFQSVQTESPWVPSELLDLSFSM
EEASSQKAAEVEEVQAGKAVHYTWAKPTGSRELCWRCGKYSGKLKSEEDLLEDLGKDGKL
FVISFYEGLQRVVLFTEELRIYKLLCESEKAQLAEQEIILSLYNVGVSLVNNSSCQEVSY
IGITSSDVVWEMKPKKKNRWKPMSNEVADMLEKSFKEYIESGPIDKAIVDLDNSFQVCLS
PNGTDMRLLQPCDAPLRRHFLPGVKVEYSVSPRQSSYRVQIHHIQIQNQLPGAIFPYVFY
PVKLPKSVTMDAEPKPLTDLSIVTRAAGHSDISRIKYFKVLIQEMDLKLDLGFLYAILDL
FTPEDASVISVQQEVELFEKDVEYIKTELNHVSSADTTPISLYEYFHISPIKLHLSLSLS
TGGEDGLKGKRERELIPVQSLNLLLKSIGATLTDVQDVVFKLAFFELTFQFCTTQQLQWE
VIRHYSKQAIKQMYVLVLGLDVLGNPFGLIRGLSEGVEAFFYEPYQGAIQGPEEFVEGMA
LGVKALVGGAVGGIAGAASRITGAMAKGVAAITMDEEYQQKRREAMNKQPSSLREGLTRG
GKGLVSGFVSGITGIVTKPIKGAQKEGAAGFFKGVGKGLVGAVARPTGGIIDMASSTFQG
IKRAAETSQDIESLRPPRFIHEDGVIRPYRQREGIGSQMLQKIENGRFAKYRYFAHAKVN
DSDFLMITKKGIFFVTTGTFGQLICEWQYLFDEFTKEPTIIENRRLRIEAKERVKSVFHA
KEFGKIINFRSPEIATWVLAKLEDARESLPKY
NT seq
9819 nt
NT seq
+upstream
nt +downstream
nt
atggtcttcgaaagcgtcgtggtagacgttctcaataggttcctgggtgactacgtggtc
aaccttgacagctcgcagcttcaactcggtatatggggaggtgatgtcgcgcttcgaaat
cttgaaattaaggagaatgctttgagtcagcttgacattccttttaaagtgagagcggga
cacatagggcgacttgagctccagattccctggaagaacctttacacccagtctgtggag
gccacactggatggcgtctatctgctcattgtcccaacagcaagtatcaagtatgatgcg
gaaaaggaggagaagcagctgcaggaagcacgacagagggagctgcaaaggattgaggag
accaagctgaagatcgccgagcaagagaaccccacggcagagaaacaggacacatttgtg
gagaagctcgtcactcagatcatcaaaaatgttcaagtcaagatctccaatatccacatt
cgctatgaggacgatgtcaccaatccgcggtgccctttgtccttcggcgtgtcgcttagc
aacctcagccttcaaacctgtgatgaagactggaacccgactgtcttggatgagaatgcc
aggctattctacaagttggtacagctggacaaattgtttgcctactggaatgtcaactcg
gtgcttttctccaatcacagtccggatgaggctttgttatgtctccagaatagcctggac
ctcaaaggctcccatcctgcagaccacgatttcattttgcgtcccatctcagcgggtgca
aagctttgcatgaatccccggtcagatttggacttctcgtcacctaaagtggatctcatg
gtcaatctcagcgaggtggcaattgagcttaacaaaccccagtacatcagcatcttggag
ctactaggctcagtggatttgatgtcacgtaacctgccatacagaaaatacagacctgac
gtctttgttcacaaaaatgccaacatttggtggaactatgccatcacgagcgtcctggag
gtggacgtgaagcctcgtctccacatgtggtcgtggcctcacattcagcaacaccgcaag
ctggtgaagcactaccgcgagctctacaagatcaagatcaccagcaaaaaacccagtgag
gaactactcaaggaactgcaggagccggagaagacacttgatatttttaacatcacacta
gccagacaacaggccgaagtggaggtgagtaaggctggcttgcgtatttaccgtccgggc
ttgaagatggaggaagaggaatctcaagggtggatcagctggatgtggaactggggggcg
gagcctgactctgaaacaaaggaggtcaagagcacaggaggaggctttgatgagctgtta
actcctgatgagaaatccaggctctacactgccatcggatacagtgagacggccgctaat
ttcatttatccgaaggattttgaggacttaaaggggaatttccacatggaaaaactgagc
gtctccatcaaagaccgcaaggacaaagatgaaatcatcaagttgacagtcggggagctg
atatcctccctgacgcagagatctggagcacaagccatcaaattcacagccgagctcagt
ttgttcgagatcacgggtcaggcaagtaaccggcccgctcccaccctcctttcgtccaag
acggtcggcacgggaacaggaactccgctgctcagcctgtttttcgagactaaccctcca
gatcagactgccaatcagcggttctttgctgaatcgcagccgctagaaatcatctacgat
gccatgacggtgaatgccatggccgcattcttcaggcctcctgacgacctgcagctcgac
gaactcaccaacgccacactgataaaactggagcagttccgagaccgtacagccactggg
ctaatgtatgtgatcgagacgcagaaggtgctggacctgaaggtgaacctgttggcctct
tatgtcatcatcccacagacgggcttctacgacggcactcagaacatcttgctgctcgat
ctcggacacttgcagatgtccagtcagtccaaaaagaacctgcctcagctctcagcggtc
tctagcaaactcgaagacatcatgctgagagcttacgacagctttgacatccagctcagc
aacctgcaattccttttcagtaaaccagacggcgactggaaaaaggcccgcatgcagagg
cagtcgccgctccacatcctggagccggtggatttgcaaatggagttcagcagggccatg
gtggtcaaagactcacgcatggcaaaatataaactgtctggacagcttcctctgctctcc
ctccgaatctccgacgtcaaacttcgaagtgttctggagctggtggacagtatcccactg
ccgcggacgaattctgcttcggccaacactggcgtgcccccactttcaaagcccaagcag
ttcacaccacaattgtcaacgaggagacatctgcagttgaccgacaagcgctcctctctg
attttcgagtcatgtgagaccatcagcatttcttcactcgggtccgaagaagacttgttc
tacgacgcccccagctctcctatcacggggcagcagttcttccccgacagtcccatgccg
ctgcgctacgccgacctaaacagacgaaagggtgtcgcacaggaggagcgtcagaagaac
atgactgactttgtcatgacgtttgaaatcagcgagttctgtgtccagttgtgccgcctc
attggcagctgtcaggaggtcacagtgctccacttggaagtggagggcctgggcactgag
ctgaaaatgcgcaccttcgacatgacatccaacacttacctcaaggagatctgcctcagg
tgtcccgaatatacagattcccaaaacaaggaaattcaactcatcactactttggataac
acagaggtcgatatgctcacactagagtatattaaagctgagaaagacgggcctgagttc
aagtccctccacaataacacagagcagctactcaaggtgactttctcatcgctggacgtt
aatctccacacggaggcgctcctcaacaccatgcactacctcaacggtctgatgccacag
tacacccaaagggaggagagcgagcaggaggagcttcacaccatccgtgaggaagacgag
atggacgagctggacgagggcaagacggagggggcggtcattgccaagagaaaaacacca
aagaattccaagaccacagccatcatcaatttgcacctccgagccgatctgcgctctctg
aaggtttacattcgagggcagcaagatatgatctcggagatcagaatcgaaggcctggtt
tttgaggttctgatgaggaagcgagagatgaaggtcttggccaacctgaagaacttcatc
atgtttgactgtcacgaaaccgccttctataagaaggctgtgtctatagcagacagggag
gtgtttgccttccaaatgatccaacacacagacgcgaccgagggagacgcctactttgac
atgtctcaggttgacaccacagttacgttgacagtgggatgcatccaggttatcttcctc
aacaagtttttgtcctccatactggcgttcattaacaacttccaagaggccaaggaggct
gtcgccgaggtgacccagcaggcggccgaaaaggcggcatccggcgtggtgaaagagctg
tcggagcgcagcactcgcatctctctcaacgttcacttcaaagcgcccgtcatcttcatc
ccgcagtcgtcctcgtcccccaacgtcctggtggccgacttgggcttcctgtcggtcaag
aatcactttgccaagcagccctcgaagagttaccgcaagatcccgcctgtggtggacatt
atggaagtcaagctcacggacctcaagatgtacaggacgacatttgttaatggagtgttt
cggggtgaaagcaaccttttgcagccaatcagtctggaagtggagatccagaggaatctt
tcgtccaactggtaccacagcatacccaacattgagatcacagctcatcttatgcccttg
agcttgatcctcagccaggatgacatggtggttatcttcaggactctcaatgaaaacctc
tcagagaactcgaacactgtcaccgcctctgcgccagctcacactgaagactcgacagct
gataagggatcccgcagctcgggaaacgcagaaagagccaacagcaacacagtcgtgaca
gcggctgtagtggagactcggaagaatgtcaaactgaagacaaccctgaaagcagacttc
aagattgactccatggcgctggtcctatttaagcccaatatgaatgagcttctccttttg
gagccgcatgataatgagctgaaactgggcgagttcaccttgggcaccatttccacctcc
tttaccatgtactcggacagctccatgaaggccgccgtccgtctggctacctgcctcctc
gatgacaagaggccgaatagcaagacagtcagcccaaggatgatggccatgcgtcccgga
acggaaaaaaacatgatggtggaggtcaactaccggcggagccacgaaggcaccaaccta
gacacggtggtacaggatgtgtacctgtgcgccagcatggagttcctccttactgttgca
gacgttttcctgaaagccaccaagcaaggctttgctgaaacaccgcaagccaagaaaaac
ccagttccgctagataaaaacaacatccctgcccagccaggggaatcaattccgtctcca
gccgtcgcgccaaagtccgagatgaacgtcgtcgtgcgaaacccagagatcgtgttcgtg
gccgacctgacgcgtgccgacgcgctggccctggtgatgaccacgcagtgcgagttagtc
atgaaaagcgacgcagagagttcaaggatgacggccgtaatccaagacctcaaggtggtg
gcgtgtcctttcctcagggagaagagactacacaacgtgaccacagttctgcagccgtgc
caggtgttctttcaaagttctcagtccccaacatccccgcaggcaatggagatcactatc
aattctctctcgctcaaggtttcgcccattatcatcaagacggtcatcacaatccagtcg
gcctttaaccgcaccacggagaccacagaggagattgaaagtcctgtccctgtggacatg
tgggagaaacgggactggaaggatctcaaactgtggttcttggaggagcagggagaagca
agcatgaaagcagcagccccactcatcccacagggggagtcacttaagatggacatcaag
tcaatctgtgtgacgttggaggctggagtgggccaccgcaccgtgcccatgcttctggca
aaatcctcctaccaaggagatgtcaacaactggtccacgctcattaacttgaagagtgaa
ctgaatttagaggtccattactacaacgaggtggtgggtgtgtgggagccgctgctggag
ccgttagaggatgagatgagagatggattccgaccctggaaattggaattcaagatgaaa
acaaagccattgaagaacatcgagtgggcagatgaggtggattacaatgtccctgattac
aagactgtcattttgatcagcagcaaggaccagctcaatgtcaccctctccaaatgtgga
cttgctatgctgagtaacctgggcaaggcttttgccgacgctgccaaagagacggccggg
tgcttccagaaggacgaggctccgtttgtggtgaagaaccgcctgggcctgcccgtgttt
gtccagtacagcgacatgttttccccggtcgccacgcacagcaacgaccatattgtcgag
cttcaggacggccaaacgctcgggatggactattccgtcaccaccgagtcggaccagttc
tcagcaatgatctcgctcagtgaaaaggacttctacatacaaccgactccagcgggtcac
acatcagccagcatgatccccttgattaaagttggacggagaatgtatagtgtcatgcac
gaggtgtcgggagtcacgcgcttcctggtctgtcaggtgtattccatggaaggtagcaag
tacatcaagatccgctcgcctttccagatcatcaaccatttctccatcccctttaaagtg
tttgaggggtcaacatatttgggtacctcattacccacagaggagtactgtgtccctctg
gactcgtacaggtctgagctgagcctccagccggtcacaggtgaagacggtgaccagttt
gagtgctcggagggcttcagctacgacgatatcaacccccaggagcccaagattcacatt
caacaggagtgcctccgcagcggcaatccgggcgacgtgctgacggtcaacattgtgcct
gtgaaggacgcagtgacgtttaaagacacaggcggcattgggggcaactttgacgtgcca
tatgttctccatctgtggccttgtgtcctcctacgaaatctgctgccttacccgatcacc
tataaactcaatgacagcagcgagtgtgaaacagagtccacattgaacccgggccactcc
gcccaacttcacactgccgtcatcaaccaatccagcctggaccttcgcctgattgactac
ctcgctcaagactggtctgctcagtacagcctgtgcagtgagcaggaggaaattgccttc
atcgtgtttgagtccctccgcacggaggaggaagactacggcgaagggatggagaggctg
cgggctgagctggacatcgccgtgcacgtcaagcacgaccagggccagatggtggtggct
atccactcaccatactggatggtgaacaagacgggcagactgctgcagtacaaggcggac
gacatccaccgcaagcacccgctggattatgaaatgccgctgcttttctccttcaaacct
cgctacttcctgaagaacaacaaggtgcgtctcatgatctctgaaagcgaactctctgat
gatttttccttggataccgttgggagctacggagatgtgaaatgtaaaggccagtataaa
gattatctggtcggcgtgaagatcgacaccagcagcttcagtctcacccgcatcgtcacc
ttcatgccattttacgtgctagtaaacaggactaagcagactgtcctcatatgtgaggag
ggccaggagaactggaccgtagtcccgcctgaacagtccgccattccgttctggcctgaa
aatgatgccaagcttctgaaagtcaaaacagaaagctgtctgtctccgcctcgcaccatc
aacttcacacgtccagagaactgcttattgctgcacttggataacactgtgggcggtatc
attgttgatgtcaatgtatcggaccactcggccaccatccgattttccgactaccacgat
ggcgcagcgcccttccttatcatcaaccacactaaagaccagaccttgcagttctttcag
agcgtacagacagagtccccatgggtgcccagtgaactgctggatctctctttctcaatg
gaggaggccagctcccagaaggcagcagaagtggaggaggtacaggccgggaaagccgtg
cattacacttgggccaagcccacgggctcccgggagctctgctggaggtgtggcaaatat
agcgggaagctgaagagcgaagaggatctgcttgaggacctggggaaggacggcaaactt
tttgttatctccttttatgaaggtctccagcgcgtggtgctgttcacagaggagctgcgc
atctacaagctgctgtgcgagagcgagaaggcacagttagccgaacaggaaatcatactg
tcgctctacaacgtgggcgtttcactggtcaacaacagcagctgccaagaggtctcctac
atcgggatcaccagttccgacgtggtgtgggaaatgaagcccaagaagaagaaccggtgg
aaacctatgagcaacgaagtggctgacatgctagagaaaagcttcaaagagtacattgaa
tccggacccattgacaaagccatcgtcgacctggacaacagcttccaggtttgcctgtct
cccaacgggacggacatgcgattgctgcagccgtgcgacgcccctctcagaaggcacttc
ctgccgggcgtcaaggtggagtacagcgtctcgccgcgccagagctcctaccgggtccaa
atccaccacatccagatccagaatcagctcccaggagccatctttccctatgttttttac
ccggtaaagcttccaaagtctgtcaccatggacgcagaacccaagcctctgaccgacctc
agcatcgtcacgagggcagcaggccactctgacatctcccgcatcaagtacttcaaggta
ttgatccaggaaatggatctgaagctggatctgggcttcctctatgcaatcctcgacctg
tttaccccagaggatgccagcgtcataagcgtccaacaggaggtggaactgtttgagaaa
gacgtggagtacattaagactgagctgaatcacgtttcctccgctgataccacgcccatc
agcctatacgagtacttccacatttcccccatcaagctccatttgagtttatctctgagt
acgggcggtgaggacggcctgaagggaaagagggagagggagctcatacctgtccagtcg
ctcaacctcctgctcaagagcattggcgccacgctcaccgacgtgcaggacgtcgtcttc
aagcttgctttctttgagttgacgttccagttctgtaccacccagcagctccagtgggaa
gtcatcaggcattattccaaacaggcaatcaagcaaatgtatgtcctggtgctgggccta
gatgtactgggaaatcccttcggcctgatcagagggttgtccgagggagtcgaggccttc
ttctatgagccctatcagggcgcgatccagggcccagaggagtttgtggaagggatggcg
cttggagtgaaggctctggtaggaggagctgtagggggcatagcgggtgcggcctccagg
atcactggtgccatggccaagggcgttgctgccatcacgatggatgaggagtaccagcag
aagaggcgagaggccatgaacaagcagcccagcagcctcagagagggtctcaccaggggt
gggaaaggattggtctcgggatttgttagcggaatcacaggcattgtcaccaaacccatt
aaaggagcacaaaaggaaggagcagcaggcttcttcaaaggagtcgggaaaggtctggtg
ggtgccgttgccaggcccaccggaggcatcatcgacatggccagtagcacctttcaaggc
atcaagagggcggcagagacgtcgcaagacatcgaatccctgcgcccccctcgcttcatc
cacgaagatggcgtcatacggccatacaggcaaagagagggcatcggaagtcagatgctt
cagaaaatcgagaacggccgttttgctaaataccgatactttgctcacgctaaagtcaat
gactcggacttcctcatgatcaccaagaagggcattttctttgtgaccacgggcacattt
ggtcaactgatctgcgagtggcaatacttatttgacgagttcaccaaggagcccaccatc
attgagaaccgacgacttcgcatcgaggccaaggagcgagtcaagtcggtgtttcacgcc
aaagagttcggcaagatcattaacttcaggtcgcccgagatcgccacgtgggttctcgct
aaactggaggatgccagggagagtttacccaaatactga
DBGET
integrated database retrieval system
