Hippocampus comes (tiger tail seahorse): 109522664
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Entry
109522664 CDS
T04969
Name
(RefSeq) collagen alpha-1(XIII) chain-like isoform X1
KO
K16617
collagen type XIII alpha
Organism
hcq
Hippocampus comes (tiger tail seahorse)
Brite
KEGG Orthology (KO) [BR:
hcq00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
hcq00536
]
109522664
Glycosaminoglycan binding proteins [BR:
hcq00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109522664
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
109522664
NCBI-ProteinID:
XP_019736975
LinkDB
All DBs
Position
Unknown
AA seq
655 aa
AA seq
DB search
METEQKWTAAAKMSTKLQKTPSEKFKWDNWRHFSSVTICIALSLLSVGICIGVFVWTTAL
QSRIASLEQQHLSAWMLSLEQVEPVILNRLDQILDKKLAARLPKTREVREASYSCLCPPG
PPGPPGRAGFPGDKGSMGIPGRMGFKGQAGAKGAPGEPGLSIIGPRGPPGQPGTRGFPGF
PGPIGLDGKHGQNGLKGDVGQRGPKGLPGEPGPKGEKGVCGDYTHRMLPITVRNMPSISP
LILKRLKQGEPGAQGPPGPPGPPGLPGNPGLNGASGSPGKPGEPGKPGKDPRLLQGLKGE
PGLPGQKGDRGDVGPTGPEGPKGDEGKRGFAAEKGEKGEPGLPGTPGSKGQTGTPGIPGK
RGYRGEKGEAIISTLGIKGEPGSPGVPGLMGPKGDKGDKGIQGEAGPEGPAGPRGPPGAP
GEPGKAEIHHNENDIGNIHLMGPPGLPGPPGPPGFTGAKGEVGLPGPPGLDGDKGTKGET
GEGGRSEMLYGPPGPPGPSGPVGPAGSQGPSGPKGEPGIGLRGEKGATGQKGDKGDRGHL
GLPGAHGLDGRPGPVGLIGPAGVAGPAGPKGERGENGDAGQPGPIGPQGIPGFVGPQGLK
GNRGERGKKGNRGAKGDKGDQGAPGLDAPCPLGDDGLPVPGCWNKGQHPFQLAKK
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atggaaacggagcagaaatggacagccgctgcgaaaatgagcacaaagctacagaagacc
ccttccgaaaagttcaagtgggacaactggagacatttttcttccgtcacgatttgtatt
gcattatctctgctaagtgttggaatatgcattggagtttttgtgtggacaacggcgttg
cagtcaaggatagcgagtcttgagcagcaacacctctctgcctggatgttgtcccttgag
caggtggagcccgtgattttgaacagattggaccaaatcctggacaagaaattggcagct
cgattaccaaagacgcgagaagtgagggaggcttcttacagctgcttgtgtccgccagga
cctccaggtcctcctggacgtgcaggcttcccgggtgacaaaggaagtatggggattcct
ggaagaatgggctttaaaggacaagcaggggcgaagggagctcctggagaaccaggtctg
tcaatcattggacccagaggacctcctggtcagcctggaacaagaggatttccagggttt
ccaggtccaattgggctggatggcaagcatggacagaatgggctcaaaggtgacgtgggt
cagcgtgggccaaaaggactccctggagaaccaggacctaaaggagagaagggcgtctgt
ggagactacacacatcggatgttgcctatcaccgtgcgcaacatgccctcaataagccct
ctaatcctaaaacgcctcaagcagggcgagccaggcgcgcaggggcccccaggaccacca
gggcctccgggtctgccaggcaacccaggtctgaatggtgccagcggctcaccgggtaag
cctggtgaaccaggaaaacctggaaaagacccaaggctcttacaaggactgaagggagag
ccaggtttaccaggacagaagggtgatcgaggtgatgttggtccaacaggtcccgaaggc
ccaaagggagacgaagggaagaggggttttgcagcagaaaaaggggagaagggagaacca
ggtctcccaggcacccctgggtcaaagggccagaccggcacccctggcatccctggcaag
aggggctataggggagagaagggagaggctattatttccacacttggaattaaaggagaa
cccggatcgccaggagtgccaggcctcatgggaccgaagggtgacaagggcgacaaggga
atccagggagaggcaggccctgaaggcccagctggaccaagaggccctccaggtgcacct
ggcgaacccggaaaagctgaaatccaccataatgaaaatgatattggcaacatacatctg
atgggcccgcctggattacctggacctccggggcctccagggttcactggggcaaaaggt
gaagttggcctcccaggtccgccaggccttgatggagacaagggaacaaaaggcgagact
ggtgaagggggaaggtcagagatgctctatggtcctccaggtcccccggggccctcagga
ccagttggcccagcaggatcacaaggaccttcggggccaaagggagagccaggcataggc
ctcaggggagaaaagggagcaacaggtcaaaaaggtgacaagggggacagaggccatctt
ggactgcctggggctcatgggttagacggcagacccggtccagtgggtctaataggacca
gcaggtgtagcagggccagcaggaccaaagggggagagaggtgagaatggagacgctgga
caaccaggaccaattggtccacagggcattcctggctttgtaggaccacaaggactcaaa
gggaatcggggagagaggggcaagaaaggcaacaggggggccaaaggggataagggagac
caaggagcacctggattagatgccccatgtccgttgggagatgatggcctacctgtacca
ggctgttggaacaaaggtcaacaccccttccaactggctaagaagtaa
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