KEGG   Hippocampus comes (tiger tail seahorse): 109523454
Entry
109523454         CDS       T04969                                 
Symbol
rfc4
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
hcq  Hippocampus comes (tiger tail seahorse)
Pathway
hcq03030  DNA replication
hcq03410  Base excision repair
hcq03420  Nucleotide excision repair
hcq03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:hcq00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    109523454 (rfc4)
   03410 Base excision repair
    109523454 (rfc4)
   03420 Nucleotide excision repair
    109523454 (rfc4)
   03430 Mismatch repair
    109523454 (rfc4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hcq03032]
    109523454 (rfc4)
   03036 Chromosome and associated proteins [BR:hcq03036]
    109523454 (rfc4)
   03400 DNA repair and recombination proteins [BR:hcq03400]
    109523454 (rfc4)
DNA replication proteins [BR:hcq03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    109523454 (rfc4)
  DNA Replication Termination Factors
   ELG1-RFC complex
    109523454 (rfc4)
Chromosome and associated proteins [BR:hcq03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    109523454 (rfc4)
DNA repair and recombination proteins [BR:hcq03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     109523454 (rfc4)
  Check point factors
   HRAD17(Rad24)-RFC complex
    109523454 (rfc4)
SSDB
Motif
Pfam: Rep_fac_C AAA RCF1-5-like_lid DNA_pol3_delta2 AAA_lid_RFC1 AAA_22 AAA_30 AAA_11 AAA_16 AAA_assoc_2 AAA_19 Mg_chelatase SLFN-g3_helicase AAA_14 AAA_24 AAA_5 AAA_7 DUF815 Gp44_lid AAA_28 Cdc6_lid RuvB_N
Other DBs
NCBI-GeneID: 109523454
NCBI-ProteinID: XP_019738184
LinkDB
Position
Unknown
AA seq 341 aa
MDKTGNSGKHEVAKEARTTLKEPRPHWSQFRVVDLDQGSRLYVFGTRTLPNLLFYGPPGT
GKTSTILAAARELYGPELYKQRVLELNASDERGIQVIREKVKNFAQLTVAGTRSDGKPCP
PFKIIILDEADSMTAPAQAALRRTMEKESRSTRFCLICNYISRIIEPLTSRCSKFRFNPL
ADQVQEKRLLEICEKEKLKYTIESILALVRVSEGDLRKAITFLQSAARLNVNNEITELAV
IEIAGVVPTKMINDLLQVCLKGSFEKQEFAVMSMVNEGYAATQILSQLHDCIIEQDLSDE
HKSVITEKMAVVDKCLSDGADEYLQLLSLCSAIVPQAPQNN
NT seq 1026 nt   +upstreamnt  +downstreamnt
atggataaaactgggaacagcggcaaacacgaagttgcaaaagaagctagaacaacgtta
aaagaacccagacctcactggtctcagtttagggtcgtggatctggatcagggcagccgg
ctttacgtttttggaaccaggacgcttccaaacttgctcttctatggtccacctggaaca
ggaaagacctctaccatattagctgctgcgagagaactttatggcccagagctatacaag
cagagggtgcttgagctcaatgcttcagatgaaaggggcattcaggtcatcagggagaag
gtcaaaaactttgctcagctcactgttgcagggactcggtcagatgggaagccatgtcct
ccttttaagatcatcatcctggatgaagctgactccatgactgcaccagctcaggctgcg
ctcagaaggacaatggaaaaggagtcccgctccacacgtttctgtctcatttgtaattac
atcagcaggatcattgagcccttaacgtccagatgttccaagtttcgttttaaccccctt
gctgaccaggtacaagaaaagcgcctgctagagatctgtgagaaggagaaactcaaatac
acaatcgagagtatattagcattagtgagggtgtcggaaggagacctgcggaaagccatc
accttccttcagagtgctgcacgcctcaatgtcaacaatgagattacagaacttgccgtc
atcgaaatagctggggttgttccaaccaagatgatcaacgatttgcttcaggtctgcttg
aaaggaagttttgagaaacaagagtttgcagtcatgagcatggtgaatgaaggctatgca
gccacacagatcctgagtcaacttcatgactgtatcattgaacaggacttgagtgacgag
cacaagtctgtcatcactgaaaaaatggcggtggtggacaaatgcctgtctgatggtgcc
gatgaatatttgcagctgctcagtctgtgttcagcaattgtcccgcaagcaccccagaac
aactga

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