Hippocampus comes (tiger tail seahorse): 109524499
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Entry
109524499 CDS
T04969
Symbol
pcdh20
Name
(RefSeq) protocadherin-20
KO
K16498
protocadherin delta 1
Organism
hcq
Hippocampus comes (tiger tail seahorse)
Pathway
hcq03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
hcq00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
109524499 (pcdh20)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
hcq01009
]
109524499 (pcdh20)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
hcq04515
]
109524499 (pcdh20)
Protein phosphatases and associated proteins [BR:
hcq01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
109524499 (pcdh20)
Cell adhesion molecules [BR:
hcq04515
]
Cadherins
Protocadherins
109524499 (pcdh20)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
109524499
NCBI-ProteinID:
XP_019739994
LinkDB
All DBs
Position
Unknown
AA seq
888 aa
AA seq
DB search
MVERKLPGLGPRGEIWGFFILLLYAGSPSCFASFSQAKELLYRIKEGLPKGTFIGAIGVD
LNLDLTADPPYFFSVAQRSFSEQYVTLNNLTGDFFTSATEIDRETLCPSNPHGHGCFLSV
DVFVLPQQYFQLIKVKMIIEDINDNRPKFPVDEIVISVPENTAINARYAVEQSAVDPDLG
LHGVQTYWLVNDFGVFTLDVEENEGGELTPFVIVTDFLDRETQAEYITDIIAEDGGTPPL
LGAATLKIVILDVNDNCPQFTESHLNLTLRGNSTKGTHLARLRAFDPDIGANAQISYAYS
ERVPRGTRSLFHLNRTTGVIKLAGKIDTATATSYKLTVLANGPGCIPAVATVAIRLIKVR
MGPPVVIARYIAQEKNGVVTIKESEPAYSPIAFFTVKNIDASHKVDCRLEGTGPFRIGPY
QLIKNEFLLETTEPLDYETVQGYELVVVAEDSQGLIIETFLKVQILDENDNAPVFQQSLV
EISLDENNPPNTYLTQLQATDQDSEARGEVIFLLGGDAPAIFVLDRLTGILSVTTSLDRE
EKDTYRFMARAVDQGTPRRESIATVVVTVRDRNDNSPRFINKDFTFFVPENFPGYGEIGV
LSVTDADVGENSWVALSILNGSDIFLIDAGRGTLRAKISLDREQQGTYQLWIEAVDGGEP
ALSSVTMVTVLLLDVNDNPPVVLFPQSNQSYMLVLPNTLPGTSITEVYAVDNDTGMNAVI
AYSIIKRKGGEPGSFSIDPETGNITLERELSNRGLHSLLVKVSDHGQPEPLYSTVRVNLF
VNETVSNESYIQSLLTREADIEIEDRPWQIGQLQEGPERYDMFPCKPALIALSVTCVGLF
FSLVTLTACICLNRFQKQKAKSEVELPLKMKTDSMQANNRKLGHVSNI
NT seq
2667 nt
NT seq
+upstream
nt +downstream
nt
atggtcgaaagaaaactccctggacttggcccgagaggggaaatatggggatttttcatc
cttttgctttacgccggctctccgtcctgttttgcaagcttcagtcaagcaaaagaactc
ctctatagaataaaggaggggttaccaaaggggaccttcataggagccattggagtggac
ttgaatttggatttgacagctgaccccccctattttttcagcgtggctcaaaggagtttc
agcgaacagtacgtgacactcaataatctcaccggagacttttttacatccgccacggag
attgacagggagacactttgcccttctaacccacacggacacggatgtttcctctcagtg
gatgtgtttgtgcttccgcagcaatattttcaactcatcaaagtgaagatgatcatcgag
gatatcaacgataacagaccaaagttccccgtggacgagatcgtgatatccgtcccggaa
aacacagccatcaacgctcgctacgcggtggagcagtccgcagttgacccggacctgggt
cttcatggagtgcagacctactggctcgtgaacgactttggcgtattcacgctggacgtg
gaggagaacgaaggaggggagctgacgcccttcgtcatcgtgaccgattttttggaccga
gagacgcaagccgaatacatcacagacatcatcgcagaggatggggggacccctcctcta
cttggtgcggccactctcaagattgtcatcttggacgtgaacgataactgtccccagttt
acggagtcacacctcaatctcactctgcgcggcaactccaccaaagggacacatttggca
cgcctgcgtgcttttgaccccgacatcggggcaaacgctcagatcagctacgcttacagt
gagcgtgtgccaagggggaccagaagcttgttccatttgaaccgaactacaggcgtgatc
aaattagcggggaaaatagacaccgctacagccacgtcttacaaactcaccgttctggcc
aacggacccggttgtattcccgctgtcgccaccgttgctattcgtttgatcaaagttcga
atgggtccccctgtggtcatagccagatacatcgcccaggaaaaaaacggggtggtgacc
atcaaagaatctgagccagcgtactcccctattgctttttttacggtcaaaaatatcgat
gccagtcacaaggtggactgccgtttggaggggaccggtcctttcaggattggaccgtac
cagctcatcaaaaacgaattcctacttgaaaccacagagccgctggactacgaaacggtt
caggggtatgagctcgttgtggttgcggaagatagccaagggctcatcatcgagaccttc
ctcaaggtgcagattttggatgaaaatgacaacgccccggtctttcagcagtctttggtg
gagatatctctcgacgagaacaatccacccaacacctatctcacgcagctccaggccaca
gaccaggacagcgaagcccgaggggaggtcatctttctcctcggaggcgacgctcccgcc
atctttgttttggatcggctgacgggtatcctgagcgtgaccacgtcactggaccgggag
gagaaggatacgtaccgcttcatggcgagagcggtggaccagggaaccccacggagggag
tccattgccaccgtggtggtgaccgtgcgagaccgcaatgacaacagcccacggttcatc
aataaggatttcaccttttttgtgcctgagaacttcccgggttacggcgaaatcggggtg
ctctcagtgaccgatgccgacgtgggggaaaacagctgggtggccctttccatcctcaac
ggcagcgacatctttctgatcgacgcgggccgaggcacgttaagggccaagatctcgctc
gatcgcgagcaacagggtacgtaccagctgtggattgaggccgtcgacggcggggaacct
gcgctctcctcggtcaccatggtgaccgttctgctgttggatgtcaacgataatccaccc
gttgtcctcttccctcagtcgaatcagtcctacatgttggttctgcccaacactctgcca
ggaacatccatcacagaggtgtacgctgtggataacgatacaggaatgaatgctgtgatt
gcatatagcatcattaaaagaaagggaggggagcccgggtccttttccatcgacccagaa
acgggcaatatcactttagagcgggaactcagcaaccgcggactccatagccttctggta
aaggtcagtgatcatggtcagccagagccactctactccacagtcagggtgaacttattt
gtgaatgaaacggtgagcaatgaaagctacatccagagcttgctgacaagagaggctgat
attgaaatagaggacagaccctggcagattggccaattgcaggagggacccgagaggtat
gacatgtttccgtgtaaacctgccctcattgccctttcggtgacatgcgtcgggctcttc
ttctcccttgttacactgacagcttgcatatgcttaaataggtttcagaagcaaaaggca
aaatccgaggttgagttacctctgaaaatgaagacggactctatgcaggccaataatcgg
aagttagggcacgtctcaaacatctga
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