Hippocampus comes (tiger tail seahorse): 109524772
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Entry
109524772 CDS
T04969
Name
(RefSeq) collagen alpha-1(I) chain-like isoform X1
KO
K06236
collagen type I alpha
Organism
hcq
Hippocampus comes (tiger tail seahorse)
Pathway
hcq04510
Focal adhesion
hcq04512
ECM-receptor interaction
hcq04518
Integrin signaling
hcq04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hcq00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
109524772
04518 Integrin signaling
109524772
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
109524772
09142 Cell motility
04820 Cytoskeleton in muscle cells
109524772
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
hcq00536
]
109524772
Glycosaminoglycan binding proteins [BR:
hcq00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109524772
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
SNARE
Motif
Other DBs
NCBI-GeneID:
109524772
NCBI-ProteinID:
XP_019740420
LinkDB
All DBs
Position
Unknown
AA seq
1448 aa
AA seq
DB search
MFSFVDLRLALLLSAAVLLVRAQGEDDRTGGSCTLDGQVFADRDVWKPEPCQICVCDSGT
VMCDEVICEDTTDCPNPVIPHDECCPICPDDGYQGQSQVEGPKGDRGPKGERGPVGPPGN
DGLDGQPGLPGPPGPPGPPGLGGNFSPQMSHGYGDKSPVHPIPGPMGPMGPRGAPGPPGS
SGPQGFTGPPGESGEAGPAGPMGPRGPAGPSGKNGEDGESGKPGRAGERGPPGAQGARGF
PGTPGLPGIKGHRGFSGLDGSKGDTGPAGPKGETGAAGENGTPGAMGPRGLPGERGRAGA
AGAAGARGNDGAAGAAGPPGPTGPAGPPGFPGGPGAKGEAGAQGARGPEGPAGARGEAGN
PGPAGVAGPSGNPGADGAAGAKGLPGAAGVAGAPGFPGPRGPPGPHGAAGAPGPKGNTGE
AGAPGSKGEPGAKGDAGAPGVQGPSGPAGEEGKRGARGEPGPVGARGVPGERGATGGRGF
PGADGASGPKGATGERGAPGVAGPKGATGEPGRTGEAGLPGAKGMTGSPGSPGPDGKMGA
NGAPGQDGRPGPPGSVGARGQPGVMGFPGPKGAAGEAGKSGERGVMGPTGPVGAPGKDGE
LGAQGPAGPNGPAGERGEQGPAGPPGFQGLPGPQGAVGETGKSGEQGVPGEAGAPGVAGA
RGDRGFPGERGAPGPIGPTGARGSPGSSGNEGAKGDAGAAGVPGAQGPPGLQGMPGERGA
AGLPGLRGDRGEQGAKGADGAPGKDGPRGMGGAIGLPGPAGATGDKGETGPAGPVGPAGA
RGAPGERGEAGAPGPAGFAGPPGADGLVGAKGEAGNNGAKGDAGLPGPAGPTGAPGPQGP
VGNTGPKGARGAAGPPGATGFPGAAGRVGPPGPSGVAGPAGPSGPGGKEGPKGNRGDTGP
AGRPGEVGAAGAPGPSGEKGSPGADGAPGSAGIPGPQGISGQRGIVGLSGMRGERGFPGL
PGPTGEPGKQGAAGPGGERGPPGPMGPPGLAGPAGETGREGSPGNEGSAGRDGPAGPKGD
RGESGPAGVPGAPGPPGAPGPVGPAGKNGDRGETGAAGPAGPSGPAGPRGPAGAVGLRGD
KGESGEAGERGMKGHRGFTGMQGAPGPAGHAGEAGPAGVAGPAGPRGPAGAAGSPGKDGM
TGLPGPSGPPGPRGRSGEMGPSGPPGPPGPPGAPGAHGGGFDIGFISQPQDKGPDPFRMY
RADDANVLRDRDLEVDSTLKTLSQQIEQIRSPDGTRKNPARTCRDLKMCHPDWKSGEYWI
DPDQGCNQDAIKVYCNMETGETCVSPTQREVAMKNWYVSKNIKEKKHVWFGEAMNEGFQF
EYGSEGSLPEDVNIQMTFLRLMSTEASQNITYHCKNSISYMDAATGNLKKALMLQGSNEI
EIRAEGNSRFTYSVLEDGCTSHTGTWGKTVIEYKTSKTSRLPIIDIAPMDVGAPDQEFGL
EVGPVCFL
NT seq
4347 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggatttgcggctggcgctgctgctcagcgcagcggtgctcctggtg
agggcacagggcgaggacgaccgcacgggtggaagctgcacccttgacggccaggtgttt
gcggaccgtgacgtatggaaaccggagccatgccagatctgcgtgtgcgacagcggcacc
gtgatgtgcgatgaggtcatctgcgaggacacaaccgactgccccaaccccgtcatcccc
catgacgagtgctgccccatctgccccgacgacggctaccagggtcaatctcaggtcgag
ggacccaagggagaccgtggacccaagggagagagaggtcccgtcggtccccccggtaac
gatggtctcgatggccagcctggtctgcccggaccccccggcccccctggaccccccggc
ctcggtggaaacttctcccctcagatgtctcacggctatggcgataagtctcctgtccat
cccattcctggacccatgggcccaatgggacctcgtggagcccccggacctcccggttct
agcggccctcagggattcaccggtccccccggcgagtctggagaggccggacctgctggc
cccatgggaccccgcggccccgccggcccctccggcaagaacggagaggacggtgaatct
ggcaaaccaggtcgtgctggcgagcgcggacctcccggcgctcagggagctcgcggtttc
ccaggaacccccggactgcccggtatcaagggacacagaggattcagcggtctggatggt
tccaagggagacactggccctgctggacccaagggagagaccggagccgctggtgagaac
ggaactcccggtgccatgggaccccgcggtctgcctggcgagagaggacgtgctggcgct
gctggagccgctggtgctcgtggtaacgatggtgccgccggtgctgctggacctcccggt
cccactggccccgctggacctcctggattccctggtggccccggagccaagggtgaggct
ggagctcaaggtgctcgtggacccgagggccccgctggagcccgtggtgaggccggtaac
cctggacccgctggtgttgctggaccttctggtaaccccggagctgatggagctgctgga
gctaagggacttcctggtgctgctggagttgccggagctcccggcttccccggaccccgt
ggacccccaggaccccatggtgctgctggtgcccctggacccaagggcaacactggtgag
gctggtgcccctggatccaagggagagcccggcgccaagggagatgctggcgccccagga
gttcaaggaccttccggacccgctggtgaggagggcaagagaggagccagaggagagccc
ggtcccgttggagcccgtggagttcctggcgagcgtggtgccactggcggccgtggtttc
cctggtgctgatggcgcttctggacccaaaggtgccactggtgagcgcggtgcccctggt
gtcgctggacctaaaggtgctaccggtgagcccggacgtactggtgaggctggtttgcct
ggagctaagggtatgactggcagccccggcagccccggacccgatggcaagatgggagct
aacggtgcccctggacaagatggccgccctggaccccctggctctgttggagccagaggc
cagcccggtgtcatgggattccccggacccaagggagccgctggtgaagctggaaagtcc
ggtgagagaggagtgatgggacctactggccctgttggtgccccaggaaaggacggtgag
ctcggtgctcagggacctgctggacccaacggacctgctggtgagagaggtgagcaggga
cctgctggacctccaggattccagggacttccaggaccccaaggtgctgttggtgagact
ggcaagtccggagagcagggcgtgcccggagaggctggagccccaggagttgctggtgct
agaggcgacagaggtttccccggtgagcgtggagcccctggtcccatcggacccactggt
gcccgcggctctcccggatcttctggaaacgagggtgctaagggcgatgctggagctgct
ggtgttcccggagctcagggcccacctggactgcagggaatgcccggtgagcgcggtgcc
gctggtcttccaggactgagaggagatagaggtgagcaaggagccaagggcgctgatgga
gcacctggcaaagacggtcctcgtggtatgggtggtgctattggacttcccggacctgct
ggagccaccggagacaagggagagactggacccgctggacccgttggacctgccggagct
cgcggagcccctggtgagcgcggagaggccggagcccctggacctgctggatttgctgga
cctcctggtgccgatggtcttgttggtgctaagggagaggccggtaacaatggagctaag
ggtgatgctggtcttcccggtcctgctggacccaccggtgctcccggaccccagggtccc
gttggaaacactggccccaagggagctcgcggagctgctggacctcctggtgctaccggt
ttccccggtgctgctggcagagttggaccccccggcccctctggtgtcgctggacctgcc
ggaccttccggacccggtggaaaggagggacccaaaggaaaccgtggtgacaccggacct
gccggtcgccctggtgaggttggagccgctggagcccctggaccttctggtgagaagggt
agccctggtgctgacggtgctcctggtagtgccggtattcctggacctcagggtatcagc
ggacagcgtggtattgtcggtctgtctggaatgagaggagagagaggtttccccggtctg
cccggacctactggagagcccggaaagcagggagctgccggccccggtggtgagcgcgga
cctcctggacccatgggaccccctggactggctggacccgctggagagaccggacgtgag
ggttcccctggtaatgagggatccgctggccgtgatggacctgctggacccaagggagac
cgcggagagtctggccctgctggagttcctggtgcccccggaccccccggtgcccccgga
cctgtcggacctgctggaaagaatggtgaccgtggagagactggagctgctggccccgct
ggtccctctggtcccgctggacctcgtggccccgctggagccgttggacttcgtggagac
aagggagagagcggtgaggctggtgagagaggcatgaagggacacagaggattcactggc
atgcagggagctcccggacccgctggtcacgctggagaggcaggacctgctggtgttgcc
ggacccgctggacctagaggacctgctggagctgctggttctcccggtaaggatggtatg
actggcctccctggtccctctggacctcctggacctcgtggacgctctggagagatggga
ccttctggacctcccggacctcccggaccccccggagcaccaggcgcccacggcggcgga
tttgacatcggtttcatttcccagcctcaggacaagggtcccgatcccttccgtatgtac
cgcgctgatgacgctaacgttctgcgtgaccgcgacctggaggtggacagcactctgaag
accctgagccagcagattgagcagatccgcagccccgacggcactcgcaagaaccccgcc
agaacctgccgcgacctgaagatgtgccacccagactggaagagcggcgagtactggatt
gaccctgaccagggctgcaatcaggacgccatcaaggtctactgcaacatggagaccgga
gagacctgcgtgtccccaactcagcgtgaggttgccatgaagaactggtacgtcagcaag
aacatcaaggagaagaagcacgtctggttcggcgaggcaatgaacgagggcttccagttc
gagtacggcagcgagggctctctgccagaagacgtcaacatccagatgaccttcctgcgt
ctcatgtcaactgaggcttcccagaacatcacataccactgcaagaacagcatctcttac
atggatgccgccaccggcaacctgaagaaggctctgatgctccagggctccaacgagatt
gagatccgagctgagggcaacagccgcttcacctacagtgtcctcgaggacggctgcacg
tcacacaccggtacatggggcaagacagtcattgagtacaagacatcgaaaacatctcgc
ctgcccatcattgacatcgctcctatggatgttggtgctccagaccaagagtttggcctt
gaagttggacctgtctgtttcttgtaa
DBGET
integrated database retrieval system
