Hippocampus comes (tiger tail seahorse): 109525464
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Entry
109525464 CDS
T04969
Symbol
prpf8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
hcq
Hippocampus comes (tiger tail seahorse)
Pathway
hcq03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hcq00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109525464 (prpf8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hcq03041
]
109525464 (prpf8)
Spliceosome [BR:
hcq03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
109525464 (prpf8)
Complex C
U5 SnRNP specific factors
109525464 (prpf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
109525464
NCBI-ProteinID:
XP_019741530
UniProt:
A0A3Q2Z547
LinkDB
All DBs
Position
Unknown
AA seq
2339 aa
AA seq
DB search
MAVAFPFRGVPAGIPPPGVPLPPQVPDYMTEEKLQEKARKWQQLQAKRYSEKRKFGFVDA
QKEDMPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDV
PVLYHITGAISFVNEIPWVIEPVYIAQWGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPL
DYADNILDVEPLEAIQMELDTEEDGPVVEWLYEHQPLKDTTKFVNGTTYRRWQFSLPMMS
TLYRLANQLLTDLVDYNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEF
NDINKIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLI
NPISHRHSVKSQEPLPDDDEEFELPEFVEPFLKETPLYTDNTANGIALLWAPRPFNLRSG
RTRRAIDIPLIKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSF
KATKFFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERK
KSRFGNAFHLCREVLRLSKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKY
KLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLL
ARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSES
WRCWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNL
GRLTRLYLKAEQERQHNYLKDGPYITAEEAVAIYTTTVHWLESRRFSPIPFPPLSYKHDT
KLLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGI
EFMDLYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWC
QGINNLQDVWETAEGECNVMLESRYEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVV
INYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQD
TATESAHPIRLYCRYIDRIHIFFRFSADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPR
DARMRLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRI
LPKCRTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTF
TKIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVF
YTPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWE
SEFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGW
RVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFP
TWEGLFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLD
LTGIFMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHP
RKSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDI
ERYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSGYGNWFPGSKPLIQQAMAKIMKA
NPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEG
NLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEE
QPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVL
FNLYDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEW
IKVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQ
SQLTATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDD
IKETGYTYILPKNVLKKFICISDLRAQIAGYLYGTSPPDNPQVKEIRCIVMVPQWGTHQT
VHLPNQLPGHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKVMADNPSWDGEKTIIITC
SFTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPGQ
VSWNYNFMGVRHDPNMKYDLQLANPKEFYHEVHRPSHFLNFASLQEGEIYNADREDMYG
NT seq
7020 nt
NT seq
+upstream
nt +downstream
nt
atggcagttgcctttcccttccgcggggttcctgcggggatcccacctccgggtgtccct
ctcccaccacaagtcccagactacatgactgaggagaaactgcaagaaaaagcgcggaaa
tggcagcagttgcaggcgaagcgctactctgagaagagaaagtttggatttgtggatgct
cagaaggaggacatgcctcctgaacatgtccggaagatcatcagggaccatggtgacatg
accaataggaagtttcgacatgacaaaagggtctacttaggtgccctgaagtacatgccg
catgcagtgctgaaactgctggaaaacatgccaatgccttgggaacagatcagagatgta
ccagtactttatcacatcactggagccatttcattcgtaaatgaaataccttgggttatc
gaaccagtctacatagcccaatggggcacaatgtggatcatgatgcgccgagaaaagcgt
gaccggcgacacttcaagaggatgcgctttccaccatttgatgatgaggagccgccgctg
gattacgcagacaacatcctcgatgtagaaccactggaggccattcaaatggagctggac
acagaggaggatggccctgttgtggaatggttgtatgagcaccagcccctcaaagacacg
acaaagtttgtgaatggtaccacttaccgtcgatggcaattctcactgcccatgatgtcg
acattgtaccgtttggccaaccagctgcttacagacttggttgattacaactacttctac
ctgtttgacctcaaggccttcttcacgtccaaggctttaaacatggccatacccggagga
ccaaaatttgagcctctcgttcgggacattaacctccaggatgaagactggaatgagttc
aatgacattaacaagatcatcatcagacaacctatcaggacagagtacaaaatcgccttc
ccctacctgtataacaacttgccgcaccacgtccacctcacctggtaccatacgccaaat
gtggtgttcattaagacggaagacccagacctgcctgcattttactttgatccactcatc
aaccctatttcacacaggcattcagtcaagagtcaagagcctcttccagacgatgacgag
gagtttgagcttcctgagtttgtggagcccttcctcaaggaaactcctctctacaccgat
aacacagccaatggcatcgctctgctgtgggcgccaagacctttcaacttgcgttcaggt
cgtaccaggagagcaatcgatatccctctcattaagaactggtatcgtgagcactgccca
gcaggacaaccggtaaaagtgcgtgtgtcctaccagaaactgctgaagtactacgtgctc
aatgctctcaaacacagaccgcccaaggcccagaaaaagaggtatctcttccgttccttc
aaggccaccaagttctttcagtccaccaagcttgactgggtggaggttggcctgcaggtc
tgccggcagggttacaacatgctcaatctgcttatccaccgaaagaacctaaactatctg
catttggactacaacttcaacttgaagcctgtcaagacactgaccacaaaggagcgtaaa
aagtcaagatttggcaatgctttccatctctgtcgagaggtgttgcgactgagcaagctg
gtggtggacagccatgttcagtacagactgggaaatgtggatgccttccagttggctgat
gggctgcagtacatctttgcccatgtggggcagctgaccggcatgtaccgctacaagtac
aagttgatgagacaaatccggatgtgcaaagatctgaaacatctcatttactaccgcttc
aatacaggtcctgttggcaagggaccaggttgtggtttctgggcacctggatggagggtg
tggcttttcttcatgaggggcataacaccactgttagagaggtggcttggaaatcttctg
gccaggcaatttgaaggaagacactccaagggtgtggccaagaccgtgaccaaacagcgt
gtggagtcgcacttcgacctggaattgcgtgctgctgtgatgcacgacatcttggacatg
atgcccgaaggcatcaaacagaacaaagccaggaccatcctgcagcacctcagtgagtct
tggaggtgctggaaggcaaacatcccatggaaggtacctggtttgccaacacccattgag
aacatgatcctgcgctacgtcaaggccaaagctgactggtggaccaacacagcccactac
aaccgtgagcgaatccgccgtggggccactgtggacaagacggtctgcaaaaagaacctg
ggaagactaacccgcttgtacttgaaggctgagcaggagagacagcacaactacttgaag
gatggtccctatatcacagctgaggaagctgttgccatttacaccacaactgttcactgg
ctggaaagtcgccgtttctcacccatcccctttcctccactgtcatacaaacatgacacc
aagctgctcatcttggccctagaaaggctgaaagaggcttacagtgtgaaatcccgcttg
aatcagtctcagagggaagagctcgggctgattgagcaggcttatgacaaccctcacgag
gccttgtccaggatcaagcgacacttgctcacacagcgagcctttaaggaggtgggtatt
gagttcatggacctgtacagccacctggtgccagtgtatgatgtagagccactggagaaa
atcacagacgcctaccttgatcaatatctatggtacgaagcagacaagaggcggctcttc
ccaccctggatcaaaccagctgacactgaaccacctcccctgctcgtctacaagtggtgc
caaggcattaacaacttgcaggatgtttgggaaactgcagaaggagagtgcaatgtgatg
ctagagtcacgctatgaaaagatgtacgagaagatcgacttgacgttgctcaacaggctg
ctacgtcttattgttgaccacaacatcgctgattatatgacagccaagaacaatgttgtc
atcaactacaaggacatgaaccacacaaactcttacggcatcatccggggactccagttt
gcctcgttcattgtgcagtactacggcctggtaatggatctgctggtgctgggcttgcac
cgtgccagcgagatggcaggtccgccccaaatgcccaacgatttcctcagtttccaagat
acagcaacagaaagcgcccacccaatcaggctgtactgccgctacattgaccgcattcac
atcttcttcaggttttctgccgacgaggcaagagacctcattcagaggtacctgacagaa
caccctgaccccaacaatgagaacattgtgggttacaacaataaaaagtgctggccacgt
gatgctcgcatgagattgatgaagcatgatgtcaatcttgggcgtgcagtcttttgggac
atcaagaaccggctgccaaggtcagtgaccacggtccagtgggagaacagctttgtgtca
gtatacagcaaagacaaccccaacttgctcttcaacatgtgtggctttgagtgccgcatc
ttgcctaaatgtcgaacaagctatgaggagttcacccataaggacggtgtctggaatttg
cagaatgaggtaaccaaagagaggaccgctcagtgtttcctgcgtgtggatgatgaatca
atgcagcgcttccataacagagtgcgccagatcttgatggcctctggctcaaccacattc
acaaagattgtgaacaaatggaacacggctcttattggcctcatgacctacttccgtgaa
gcagtagtaaacacacaggagctgctggatctgctggtcaagtgtgagaacaagattcag
acccgtatcaagatcgggctgaactctaaaatgccgagccgtttcccacctgttgttttc
tacactcccaaagagttgggcggcctgggcatgttgtccatgggccacgtgctcataccc
cagtctgatctgcgttggtccaagcagacagatgtggggatcacccacttcaggtctgga
atgagtcatgaagaggaccagctcattccaaatttgtaccgttacattcagccatgggaa
agtgagttcatcgactcccagagggtgtgggctgagtatgccctcaaaaggcaggaggcc
attgcacagaacaggcgactgaccttggaggatttagaggactcgtgggacagaggaatc
ccgcgtatcaacactcttttccaaaaggacagacacacactggcctatgacaaaggctgg
cgagtccggacagattttaaacaataccaggtgttaaagcagaatccgttttggtggacc
caccagaggcatgatggtaaactgtggaatctcaacaactaccgcacagacatgatccag
gccttaggtggtgtggagggcatcctggaacacacgctcttcaaaggcacttacttcccc
acatgggagggtctcttctgggagaaggccagtgggttcgaagagtccatgaagtggaag
aaactgacaaatgctcagagatctggtctcaaccaaatccccaaccgtcgcttcactctt
tggtggtcgcccaccatcaacagagccaatgtatatgtgggtttccaggtgcagcttgac
ctgaccggaatcttcatgcatggaaagattcccaccctgaagatctccctcattcagatc
ttcagagctcacttgtggcagaagatccatgagagcattgtcatggatctatgtcaggtg
tttgaccaggagctcgatgctcttgagatcgagactgtgcagaaggagactatccacccc
aggaagtcgtacaagatgaactcatcctgtgctgacattctcctttttgcatcctacaag
tggaatgtatctcgaccgtctctgcttgcagactcaaaggatgttatggacagcaccacc
acacagaagtactggattgacattcaactgcgctggggtgactacgactcgcatgacatt
gagcgctatgccagggctaagttcttggactacaccacggacaacatgagtatctaccct
tcccctactggggtgctcattgccatcgacttggcatacaacctccacagtggctacgga
aactggttcccgggcagcaagcctttgatccaacaggccatggccaagattatgaaggcc
aatcctgccctgtatgtgctcagggagcgcatccgcaagggtctccagctgtactcctcc
gaacccactgagccttacctgtcctctcagaactacggggagctcttctcgaaccaaatc
atttggtttgtggatgacaccaacgtctacagagtcaccatccacaagacctttgagggc
aacttgaccaccaaacccatcaatggagccattttcatcttcaaccccaggactggacag
ctcttcctcaagatcattcacacatccgtgtgggctggacagaaacgtctgggccagctt
gctaaatggaagacagctgaagaagttgctgccttgatccgctctctccctgtggaggag
caaccgaagcagatcattgtgaccaggaaaggtatgctggaccctcttgaggtccacttg
cttgacttccccaacattgtgatcaagggctctgagttgcagctgcccttccaggcatgt
ttgaaggtggagaagtttggagacctgatcctcaaagctaccgagccccagatggtcttg
ttcaacctctacgacgactggcttaagaccatttcgtcctacacagccttttctcgactc
atcctgatcctaagagcactccacgtcaacaatgaccgtgccaaagtgatcctcaaaccc
gataagaccaccatcactgagcctcatcacatttggcccactctcacagatgaggaatgg
atcaaggtggaagtgcaactaaaagatctcattctggctgactacggcaaaaagaacaat
gtgaacgtggcatcattgacccaatctgagatccgtgacatcatcctgggtatggagatc
tctgctccctcgcagcaacggcagcagattgccgagattgagaagcagaccaaagagcaa
tcgcagctcactgccacacagacacgcactgttaacaaacacggcgatgagatcatcact
tccaccacatccaactacgagacgcagaccttctcctccaagacggaatggagggtcaga
gctatctccgctgccaacctccatcttcgcaccaaccacatttacgtgtcctctgatgac
atcaaggagacaggatacacctacatcctgcccaagaatgttctcaagaagttcatctgt
atttcagatttgcgtgcacagatcgcaggctacctgtacggcaccagcccacctgacaac
cctcaggtaaaggagatccgctgtatcgtcatggtgcctcagtgggggacccaccagact
gtccatctccccaaccagctgccaggacacgaatatcttaaagaaatggaaccccttggt
tggatccacacacagcctaatgagtcaccacagctgtccccccaggatgtcactacccac
gccaaagtcatggccgacaatccctcttgggatggagaaaagaccatcatcatcacgtgc
agcttcacgccaggctcatgcacgctgacggcctacaaattgacgcccagcggctacgag
tggggccggcagaacacggacaagggcaacaacccaaaaggttacctgccatcccactat
gagagggtccagatgctgctctctgaccgcttcctgggcttctttatggtaccaggtcaa
gtttcctggaattacaatttcatgggtgtacgtcacgaccctaacatgaagtacgacctg
cagctggccaaccccaaagagttctaccacgaagtccatcggccatcgcacttcctgaac
tttgcctcgttacaggagggtgaaatctacaacgccgatcgtgaggatatgtatggttga
DBGET
integrated database retrieval system
