Hippocampus comes (tiger tail seahorse): 109527350 Help Entry 109527350         CDS       T04969                                  Symbol htt Name (RefSeq) huntingtin isoform X1   KO K04533   huntingtin Organism hcq  Hippocampus comes (tiger tail seahorse) Brite KEGG Orthology (KO) [BR:hcq00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:hcq03019]     109527350 (htt)    04131 Membrane trafficking [BR:hcq04131]     109527350 (htt)    03029 Mitochondrial biogenesis [BR:hcq03029]     109527350 (htt) Messenger RNA biogenesis [BR:hcq03019]  Eukaryotic type   mRNA surveillance and transport factors    mRNA cycle factors     Common to processing body (P body) and stress granule      109527350 (htt) Membrane trafficking [BR:hcq04131]  Endocytosis   Rab GTPases and associated proteins    Rab associated proteins     109527350 (htt) Mitochondrial biogenesis [BR:hcq03029]  Mitochondrial quality control factors   Regulator of mitochondrial biogenesis    Other regulator of mitochondrial biogenesis     109527350 (htt) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Htt_C-HEAT Htt_N-HEAT Htt_bridge Htt_N-HEAT_1 HEAT HEAT_GCN1 HEAT_EF3_N HEAT_2 Arm DUF1484 Motif Other DBs NCBI-GeneID:  109527350 NCBI-ProteinID:  XP_019744775 LinkDB All DBs Position Unknown AA seq 3194 aa AA seqDB search MATMEKLMKAFESLKSFQQQQGPPTAEELVQRQKKEQATTKKDRVTHCLTICENIVAQSL RTSPEFQKLLGIAMEMFLLCSDDSESDVRMVADECLNKIIKALMDSNLPRLQLELYKEIK KNGASRSLRAALWRFAELAHLIRPQKCRPYLVNLLPCLTRITKRQEETVQETLASGMPKI MSALGHFANDGEIKVLLKSLVANLKSSSPAIRRTAASSAVSVCQHSRRASYFYTWLLNVL LGLVIPVDEEHFSHLILGVLLTLRYLMPLLQQQVNTSSLKGSFGVMKKEADVHPTPEQLL QVYEVTLHYTQHWDHNVVTASLELLQQTFRTPPPELLHMLITVGTIPHATVFRQDTESRV RSGSILEFIAGASSCSPLLLRKQRGKMLSGEEDGLEDDSEKTEVPTGAFTASVVGADVSS AAQVDIITEQPRSSQHTLQPDDSVDLSASSEQGGGGGGTSASDTPESSNENEEEMLSRSS SSGANVTPETADDTSADNAIPDGGPLIEGGPLLSTNDGSLPASDSSQTTTEGPDSAVVTP SDVAELVLDGSESQYSGMQIGTLQDEEDEGTAPSSQEEVSFLPSALALSKPHLFDLRGHN RQGSDSSVDHFIPKEESTEIEPESKPSSINGPIGHYTDQGAEPLMHCVRLLAASFLLTGQ KNGVIPDKEVRVSVKALAVSCIGAAGALLPEAFFNSLYLEPLDGIPVEEQQYVSDVLDLI HHGDPQIRGATAILCAAIIQAALMKTRYHIHTWLASVQSATGNPLSLVDLVPLLRTSLKD ESSVTCKMACFAVRHCIMTICSSTLSELGLQLVIDLLALTDSSYWLVRTELLETLAELDF RLVNFLERKTETLHKGDHHYTGHLRLQDRVLNVVIRLLGDDDPRVRHVAASAVSRLVSRL FYDCDQGQTDPVVAIARDQSSVYLQLLMHEAQPPSQFTVSTITRTYRGFNLSNMVSDITV ENNLSRVVTAISHAFSSSTSRALTFGCCEALCLLSSNFPVCTWSTGWHCGYVNSNSTLSS RGSLNRSRGRALSLSQPSNTPNSNPNSSSPDMEQRTLTVGMTNMVLSLLSSAWFPLDLSA HRDALLLAGNLLAAVAPKCMRNPWAGEEEGSSGSSYPSGVPNKMEEPWAALSERSLVTVV DQLFFHLLKVLNICAHVLDDTPPGPAVKATLPSLTNTPSLSPIRRKGKEKEAADPNAVPL SPKKSTESNAGRVADSTSGTAVNKSNTLGNFYHLPPYLKLYDVLKATHANYKVTLDLHNS HEKFGGFLRAALDVLSQLLELATLHDISKCVEEILGYLKSCFSREPTMATVCVQQLLKTL FGTNLASQYESVSSGPSRAQGKVLRLGSSSLRPGLYHYCFMAPYTHFTQALADASLRNMV QAEQEQDASGWFDVMQKASNQLRSNIANATRHRGDKNAIHNHIRLFEPLVIKALKQYTTS TSVALQRQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRDSEAVIPNIFF FLVLLSYERYHSKQIISIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVLRGSNKAD AGKELDTQKEVVVSMLLRLVQYHQVLEMFILVLQQCHKENEDKWKRLSRQIADVILPMIA KQQMHLDSPEALGVLNTLFETVAPSSLRPVDMLLKSMFVVPCTMASVTTVQLWVSGILAV LRVLVSQSTEDIVLSRVHELSLSPHLLSCNTVRRLYQQSPSPNTPPTLDSFGSQEHNGDT QKALPEETFARFLLQMVGVLLNEISCKQVKVDITEQQHTFYCQQLGTLLMCLIHIFKSGM FRRITAAASLLLKGEGASGQNESEAGLYYHLEILNSMVQGLITTHPSLVLLWCQVLLLIN YTNYSWWTAVHQTPRRHSRSCTKLLSPHSSGEADEENPVSLFSMINREIVRRGALILFCD YVCQNLHDSEHLTWLIVNHVSDLISLSHEPPVQDFISAVHRNSAASGLFIQAIQSRCYNL TNPTMLKKTLQCLEGIHLSQSGSLLMLYVDKLLSTPFRVLARMVDTLACRRVEMLLAETL QNSIAQLPVEELDRIQEYLQISSLAQRHQRFYSLLDRFRASVATTCSPAPPVTSHPLDGH PPPAPELVNADKEWYVSLVRSQCCLRGDVSLLETTELLTKLPAPDLFSIMRCEAFNLSLL CPCLSMGVQRLTRGQGPLLLETALQVTLEQLAGVMQSLPGPHRSFLPTSEPQSYWTQLAD VYDEPGFYPKVLALCRALSQYLLCVNQLPSSLRILCDKEDLITTFTCTATEVIVWRLIHD QLPLSVDLQWSLACLCLALQQTCIWNKLSTKEYATHTCSLIYCLRLIMVAVAVSPGDQLL VPEKKKNLAADAEGDEVDSIHTKYKCEWQACEIMAELVEGLQSILSLGHRKNSAIPAFLT PTLRNIVISIARLPLVNSFTRVPPLVWKLGWSPQPEGEFGTALPEIPVDFLQEKDVFREF LYRINILGWSSRTQFEETWATLLGVLVTQPITIDQEEDTQQEEDLERTQLNVLAVQAITS LVLGAMMLPTAGNPAVSCLEQQPRNKSLKALETRFGRKLAVIRGEVEREIQALVSKRDNI HTHHPYHAWDPVPSLSAASAAGMLISHEKLLLQINTEREMGNMDYKLGQVSIHSVWLGNN ITPLREEEWGEDEEDEADTPAPTSPPLSPINSRKHRAGVDIHSCSQFLLELYSQWLIPSS PSNRKTPTILVSEVVRSLLAVSDLFTERNQFDMMFSTLMELQKLHPPEDEILNQYLVPAI CKAAAVLGMDKVIAEPVCRLLESTLRSTHLPSRMGALHGVLYVLECDLLDDTAKQLIPSI SEYLLSNLRAIAHCVNLHNQQHVLVMCAVAFYMMENYPLDVGADFMAAVIQVCGVMVSAS EDSTPSVIYHCVLRGLERLLLSEQLSRVDGEALVKLSVDRVNMPSPHRAMAALGLMLTCM YTAVLASGSEVAGVRGQVDSGSAVADVVGVTAGHVGFSSGKEKASPAGRPAHSDPQAPDS ESIIVAMERVSVLFDRIRKGLPSEARVVSRILPQFLDDFFPPQDVMNKVIGEFLSNQQPY PQFMATVVYKVFQTLHATGQSSMVRDWVLLSLSNFTQRTPVAMAMWSLSCFFVSASTSQW ISALLPHVISRMGSSEVVDVNLFCLVAMDFYRHQIDEELDRRAFQSVFETVASPGSPYYQ LLVSLQSIHQDTTL NT seq 9585 nt NT seq  +upstreamnt  +downstreamnt atggccaccatggagaagctaatgaaggcatttgagtcgcttaagtcattccagcagcag cagggaccaccgaccgccgaggagcttgtccagagacagaaaaaagagcaggccacaact aaaaaagacagagtgacacactgcttgacaatatgtgaaaacatagtggcgcagtctctc agaacatctccagagttccagaaattgctgggcatcgcaatggaaatgttcctgctctgc agtgacgacagcgaatcagatgtccgaatggtagccgatgagtgcctgaacaaaataatc aaagcactgatggactctaatctgcctcgactgcagctggagctgtataaagaaattaaa aagaatggtgcctctcggagtttgagagcagctttgtggaggtttgctgagcttgcacac ctcatcagacctcagaaatgcagaccctatttggtcaacctgttgccgtgcctcaccaga atcactaagcggcaggaggagactgtgcaggagacactggcttccggcatgccgaagatc atgtcggccttgggacactttgcaaatgatggcgaaatcaaggtgctgttgaagtcattg gttgccaacctgaagtccagctcccccgccatcagaaggacagctgccagctctgccgtt agtgtgtgccagcactcaagacgtgccagttacttttacacatggctccttaatgtgctg ctcggtctggtgattccagttgatgaggaacatttcagccatctcatcctcggggtactc ttaactctgcgctacctgatgcctttgctgcagcagcaggtcaacacctcgagcctcaaa ggaagttttggagtcatgaagaaggaggctgatgtgcatccaacgccagagcagctgctt caggtgtatgaggtgactttacactacacacagcactgggaccacaatgtggtgaccgca tcgctggagctgctgcaacaaacgttcaggactccacctccagagcttttgcacatgctc attaccgtaggcaccattccacatgccacagtgtttcgtcaggatactgaaagtcgtgtg cgctcaggcagcatcctggagttcattgcaggagcgtcttcctgcagtcccctcctcctt aggaaacagagaggtaaaatgctttcaggggaagaggatggtttggaagatgattctgaa aagaccgaggtcccgactggcgctttcacagcatctgtcgttggcgctgatgtctcctcg gcagcccaggtggacatcatcactgaacagccacgctcctcccagcataccttgcagccg gatgactctgtggacttgagtgcctcctctgagcaaggcgggggtggaggcgggacatct gcctcagatactcctgagtcatccaatgaaaatgaggaggagatgctgagtcggagctca agcagtggtgcgaatgttactccggagacggctgacgacacttcagcagataacgccata ccagatggagggcccttaattgaaggtgggccactcctaagcaccaatgacggctcactc ccagccagcgactcctctcagacaaccaccgaagggccggactcagctgttgttaccccc tcggatgttgcagagctggtgctggatggtagtgagagccaatactccgggatgcagatc ggaactctgcaggatgaggaagatgaaggcacagcaccttcatcccaagaggaagtctcg tttctcccatcggcactcgctctgagcaaaccgcatctcttcgacctaagaggtcacaat cggcagggttctgacagcagcgtggaccatttcataccaaaggaggaatctactgaaatt gaacctgagagcaagccatcaagtataaatggtccaattggacattatacagaccagggt gcggagccactcatgcactgtgtcaggcttcttgcggcttctttcctattgacgggacaa aagaatggtgtgatccctgacaaggaggtacgagtgagtgtgaaggccctggcggtcagt tgcattggagcagctggggcactgcttcctgaagccttcttcaattccctctacctggag ccgctggacggcatcccagtggaagagcagcagtatgtcagtgacgtgctggacctaatt caccatggagacccacagattagaggtgccacagctatcctctgtgcagctattattcag gctgcactcatgaaaactcgttaccacatacacacctggctggccagtgtgcagagcgca acaggtaaccctttgtcccttgtggacttggtgcccttgctgagaacatctctaaaagat gaatcttcagtaacctgcaagatggcttgctttgcagtcaggcactgcatcatgaccata tgcagcagtacactaagtgaactgggcctgcagttggtgatcgacctgctggccctgacg gactcatcctactggcttgtccgcactgaactgttggagaccctggctgaactggatttt cggttagttaatttccttgagaggaaaactgaaactttgcacaaaggcgatcatcactac actgggcaccttcgactgcaggaccgggtcctaaatgtagtcattcgtctgttgggtgat gatgacccgagagtccgccatgtggcggcttctgctgtcagcaggctcgtatctagattg ttttatgactgcgaccagggccagacagaccctgttgtcgctattgcccgagaccagagt tcagtttacctgcagctgctgatgcacgaggcgcaacctccctctcaattcacagtgagc accatcacaaggacttataggggttttaacctgtcaaacatggtgtctgacatcacagtg gaaaacaacttatctcgagttgtcaccgctatctcccatgcgttctcctcctctacctcg agggcattgacctttggctgctgtgaagcactgtgtctcctgtcttcaaattttccagtc tgcacatggagcacaggctggcactgtggctatgttaactccaatagtacactttcatct cgaggcagtctcaaccgcagcaggggcagggctttaagtctctcccagccgagcaatact ccaaactcaaacccaaactcctcctcccctgatatggagcaaaggactttaacagtggga atgaccaacatggtgctctccttgctgtcatctgcctggttcccactcgacctctctgca caccgggatgccttgttgcttgctggcaacctgctagctgcggtggctcctaaatgcatg cgcaacccctgggctggagaagaagaaggtagcagtggcagctcttatcctagtggagtc ccaaataagatggaagaaccctgggcagcattgtcagagcgctcccttgtgacagtggtg gaccagctttttttccacctcctgaaagttctcaacatctgtgcccatgtactggatgat actcctccaggaccagcagttaaggccacactgccttccctgaccaacacaccctcactc agtcccattcgcaggaagggcaaagagaaggaggctgctgatcccaatgctgtgcctttg agcccaaagaaaagcactgaaagcaacgctggcagagttgctgacagcactagtggaaca gcagtaaacaagtctaacactcttggcaacttctaccacctgccaccctacctcaagctg tatgatgttctcaaagcaactcatgccaactataaggtgacattggaccttcacaacagc cacgagaagtttggcggtttccttcgtgctgccttggacgtgctctctcagctgcttgag ctggccacacttcatgacattagcaaatgtgtggaggaaattttgggctatctcaagtcc tgcttctcgcgagaacctaccatggctacggtttgtgttcagcagttgttaaagacactg tttggaaccaatttggcatcccagtatgaaagtgtctcaagtggaccaagccgtgcccaa ggcaaggtgctccgccttggctcatctagcctgaggccagggctgtatcactactgcttc atggcaccatacacacacttcacacaggctctggctgatgccagtctccgtaacatggtg caggctgagcaagagcaggatgcttctgggtggtttgatgtgatgcagaaagcatcaaac cagctgaggtcaaacattgcgaatgcaacacgccacagaggcgacaagaatgccatccac aaccacatccgtctctttgaaccactcgtgataaaagctttgaagcagtacacaaccagc acctctgtggctctccagagacaggttctggaccttctggcccaacttgtgcagctcaga gtcaactactgcttgctggactctgatcaggtgttcatagggtttgtcctgaaacaattt gaatatattgaagtgggccagttcagagattcagaggcagtcattcccaacatctttttc ttcttggtgctgctgtcttacgaacgttaccattccaagcaaataatcagtatccccaaa atcatccagctctgtgatggcataatggccagtggtcggaaagctgtcacacatgctatc cctgccttgcagccaatagttcatgacctgtttgtcctgaggggctccaacaaggcagat gcaggcaaggagttggatacgcagaaggaagtggtggtctctatgctgctcagacttgtt cagtaccaccaggttttggagatgttcatcctggttctccagcagtgtcacaaagaaaat gaggacaagtggaagaggttgtccagacagattgcagatgtcatacttcccatgattgcc aagcagcagatgcatttggattctcctgaggctttgggtgttttgaacactctatttgag actgtagcaccttcctctctacggcctgtggatatgctgctcaagagcatgtttgtcgtc ccgtgtaccatggcatcagtgactacagtccaactgtgggtctctggtatcctggcagtg ctcagggtacttgtctctcagtcaactgaggacattgtgttgtcgcgagtgcacgagctc tccctctccccacatcttctttcctgcaacacggtccgccgcctctatcaacagagcccc tctccaaatacccctcccaccttggattcatttggtagtcaagaacataatggtgataca cagaaagccctacctgaggaaacctttgccagattcttgctccaaatggttggagtgctg ctgaatgaaatttcctgcaaacaagttaaagtggacattacggagcagcaacacactttc tattgccagcagctgggtacactgctcatgtgtttaatacacatcttcaaaagtggtatg tttcgtagaatcaccgctgcagccagcctcctcctaaaaggtgagggtgccagtggccag aatgaatcagaggctggactctattaccatctagagatcctgaacagcatggtgcaaggc ttgatcaccactcacccctccctggtgctactctggtgccaagtcctactcctcatcaac tacacaaactactcctggtggactgcggttcaccagacaccaaggagacacagcagatca tgtaccaaactgctcagcccacactcttcaggagaagctgatgaggagaatcctgtgtcg ctcttctccatgatcaacagagagattgtccgcaggggagccctcatccttttctgtgat tatgtgtgtcagaacctccatgactctgagcatctcacctggctgatagttaaccatgtg agtgatcttatcagcctttcccatgagccacccgtgcaggatttcatcagtgctgtgcac cgaaattcagctgccagcggtctgttcattcaagctattcagtcccgctgttacaacctg accaatcctaccatgctgaagaagactctgcagtgtttagaaggcattcacctgagccag tctggctccctgctgatgctgtacgtggacaagctactgagcacgcccttcagggttttg gctcgtatggtggacacgttggcatgtcgcagggtggagatgttgttggcagaaacctta cagaacagcatagcccagctgcctgtggaggaactggacagaatccaagaatatctccag atcagtagcctggctcagaggcatcagcggttctattccctgctggacaggtttcgagcc tcagttgctacaacttgtagcccagcacctccagtgacatcacatcccttagatgggcat ccaccgcctgcccctgaactggtcaatgcagataaggagtggtatgtgtcgctggtgagg tctcagtgttgcctacgtggagatgtgtctctgttggagacaactgaactccttaccaag ctacctgccccagatcttttcagcattatgagatgtgaagcgttcaacctgagtctgctg tgtccatgcctgagcatgggtgttcagcgactaacacgaggtcagggcccactcttgttg gagacggcgttgcaggtgaccttagagcaacttgctggggttatgcagtcacttcctggc ccacaccggtcctttttaccaacttctgagccacagtcctactggacccaactggctgat gtgtatgatgagccagggttttatcccaaggttttagccctctgtagagctctctcccag tacctcctctgtgtaaaccagctcccatcctctttgcgcattctctgtgacaaagaagac ctcataactactttcacctgtactgccactgaggtgatagtttggcgactgattcacgat cagctacccctgagtgtggacctgcagtggtctctggcttgtctgtgcctagccctgcag cagacttgcatctggaacaaactgtccaccaaggagtacgcaacacacacgtgttccctt atctactgcttacgtctcattatggtcgccgttgctgtgagccctggagaccagcttctg gtcccagagaagaagaaaaacttagctgcggatgctgaaggagatgaagtggattccata cacacaaaatataagtgtgagtggcaagcatgtgagatcatggcagagctggtggaaggc ctacagagcattctttccttaggtcatcgtaaaaacagtgcaatccctgcttttctgacc ccaactttacgcaacattgtgatcagtattgcccgactgccactggtgaacagcttcact cgggttcctccactggtttggaaactcggttggtctccacagcccgagggggagtttggt acagcgttgcctgagattcctgtcgactttctgcaagagaaggatgttttcagagagttc ctgtaccgtataaacatacttggctggagtagcaggactcaatttgaggagacctgggcc actttgctgggcgtgctggtcacccaaccaataacaatagaccaggaggaggacacgcag caagaggaagatttagagcgtacgcagttgaatgtgttggcagtgcaggccatcaccagc ctggtgctgggtgccatgatgcttcccactgctggcaaccctgctgtcagctgtctggaa cagcagccccgcaataagagcctaaaggccctggagacacggtttggaaggaaactggca gtgatccggggtgaggttgagagagaaatacaggctctcgtttccaagagagacaatatt cacacacaccacccctaccatgcctgggaccctgtgccctctttgtctgcagcctcagca gcagggatgctgataagtcatgaaaagctgctgcttcagatcaacacagaacgtgagatg ggaaacatggactataaattgggacaggtgtccattcattcagtgtggttaggaaataat atcactccattgcgggaggaagaatggggcgaagatgaggaagatgaagcagatacacca gctcccacgtcaccacctttatcgccaatcaactctcgaaaacatcgtgcgggggtggac attcactcatgttcccagtttcttctggagctctacagccagtggcttatcccaagctct ccaagtaaccggaaaacaccaactatactcgtcagtgaagtggtccgatcgctgctggca gtgtcagacctattcacagaaaggaaccagtttgacatgatgttctccacccttatggag ctgcagaagcttcacccaccggaggatgagatcctcaatcagtacttagtgcccgctatc tgcaaggcagctgctgtgttgggcatggacaaagtgattgcagagccagtttgtcgcttg ttagagtcaaccctgcgcagcacacacctgcccagccgcatgggtgctcttcatggggtg ctctatgtcctggagtgtgaccttcttgacgatacagcaaagcaattgatcccgagcatc tctgaatacctgctgtccaacctaagggctattgctcattgcgtgaacctgcataaccag caacatgtcctagtgatgtgtgctgtggccttctacatgatggagaactaccctctcgat gtaggagccgatttcatggctgcagttatacaggtttgcggtgtgatggtgtcagccagt gaggactccaccccctcagtaatctatcactgtgtgctccggggtttggagcgtctcttg ctgtctgagcagctgtctcgagtggatggagaggcactcgtcaagctgagtgtcgacaga gtgaacatgccgtcacctcacagagccatggctgccctgggcctcatgctcacctgcatg tacactgcggtgcttgcgtccggttcagaagtcgcaggggttaggggtcaggttgactct ggctctgctgtagcggatgtggtgggggtcacggcgggtcatgttggtttctcctcaggc aaggagaaagccagccccgccggtcgccccgcacactcggaccctcaggccccagacagc gagtccatcattgtcgccatggaaagggtctctgtgctctttgacaggatccgaaaaggt ttgcccagtgaggctcgggtagtatcaaggattcttccacagttcctagatgatttcttt ccaccccaagacgtcatgaacaaggtcatcggagagttcctgtccaaccagcaaccctat ccgcaatttatggccacagttgtttacaaggttttccagacactccatgctacgggccag tcatcgatggtgagagactgggtcctgctctccttgtccaacttcacgcagaggacaccg gtggccatggctatgtggagcctctcctgcttctttgtctccgcttccacctcgcagtgg atttcagccttacttccccacgtcatcagcagaatgggttccagtgaagtggttgatgtc aacctattctgcttggtggccatggacttctaccggcaccaaattgatgaggaactggac cgcagggccttccaatctgtctttgagacggtggcatcgcctggaagtccttactaccag ctactcgtatcactgcaatcaatccatcaggatacgacactttga

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