Hippocampus comes (tiger tail seahorse): 109527674
Help
Entry
109527674 CDS
T04969
Symbol
col1a2
Name
(RefSeq) collagen alpha-2(I) chain isoform X1
KO
K06236
collagen type I alpha
Organism
hcq
Hippocampus comes (tiger tail seahorse)
Pathway
hcq04510
Focal adhesion
hcq04512
ECM-receptor interaction
hcq04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hcq00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
109527674 (col1a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
109527674 (col1a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
109527674 (col1a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
hcq00536
]
109527674 (col1a2)
Glycosaminoglycan binding proteins [BR:
hcq00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109527674 (col1a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
109527674
NCBI-ProteinID:
XP_019745274
LinkDB
All DBs
Position
Unknown
AA seq
1349 aa
AA seq
DB search
MLSFVDTRILLLLAVTSYLATCQFLGPRGDKGPRGDRGPQGPDGKDGKPGLPGPVGPPGP
PGLGGNFAAQYSKPPDPVSPMGMMGNRGPPGPPGPPGPQGHTGHPGEPGEPGQTGPVGPR
GPPGPPGKSGEDGNNGRPGKPGDRGAPGPQGARGFPGTPGLPGMKGHRGYNGLDGRKGEP
GAAGVKGEAGAHGAAGRPGLVGPRGLAGERGRAGPAGPVGARGADGNTGPSGAAGPAGAA
GAPGFPGGPGPKGEVGPVGATGPSGPQGARGEPGPNGAVGPVGPVGNPGANGLNGAKGAT
GAAGVAGAPGFPGPRGGPGPQGPQGAAGPRGLAGDPGVQGVKGDVGAKGEPGSAGPQGAP
GPHGEEGKRGPTGEIGAAGPAGSRGSRGAPGSRGMPGAEGRVGPLGMPGARGATGSAGAR
GAPGDAGRAGEPGPAGARGLHGSPGSSGPQGKEGPSGPAGQDGRTGPPGPTGPRGQPGNI
GFPGPKGPAGEPGKPGEKGATGATGLRGPPGPDGNNGATGPMGVSGGAGEKGEQGPAGSP
GFQGLPGPAGAAGEVGKPGDRGIPGDQGVAGPAGVKGERGNPGAAGSAGPQGPMGARGAT
GAPGADGSKGEPGVVGVVGAPGHQGASGMPGERGAAGPAGVKGEKGELGHKGPDGNPGRD
GARGLPGAGGPPGPTGANGDKGESGSFGPAGPSGVRGAPGERGEVGPAGAPGFAGPPGAN
GQTGARGERGPAGGKGDVGPAGPAGPAGQSGPAGPSGPAGPTGARGDNGPQGLTGFPGAA
GRIGPAGPAGIVGPAGPAGPAGKDGPRGMRGDVGPAGPAGEQGMVGPSGPAGDKGPSGES
GPAGAPGAPGVSGPLGLQGFVGLPGARGDRGSPGGPGAVGEPGRLGPAGPAGARGPAGNI
GMPGMTGPQGEAGREGNTGNDGPPGRPGAAGVKGDRGDPGPAGVLGIAGAPGPAGPSGAV
GRPGNRGDSGFTGPSGPAGAAGARGAAGPAGVRGEKGVGGDKGEMGMKGLRGHPGLQGMP
GPAGAPGDTGPAGAHGPAGPRGPAGPHGPPGKDGRAGAHGTIGAPGARGAPGHIGPVGPP
GPPGLPGPPGAAGGSYDLSGYDEYRADQPAMRAKDYEVDATIKSLNTQIENLLTPEGSRK
NPARTCRDIKLGHPEWTSGFYWIDPNQGCINDAIRVFCDFATRETCIHAQPESIAKKNWF
RSTENKKHVWFGETINGGTEFTYNDETISSQSMATQLAFMRLLSNQASQNITYHCRNSVA
YMDAESGSLSKAVVLAGSNDVELRAEGNSRFTFSVVEDGCTRHTGEWSKTVIEYRTNKPS
RLPILDIAPMDIGGADQEFGLDIGPVCFK
NT seq
4050 nt
NT seq
+upstream
nt +downstream
nt
atgctcagctttgtggatacccggattctgttgctgcttgcagtaacttcatacctagca
acatgtcaattcttgggcccccgaggagacaaaggacctcgaggtgacaggggtccccag
ggacctgatggaaaagatggaaaacccggacttcccggccctgttggcccccctggaccc
cctggactcggtggaaactttgctgctcagtactctaagcctcccgatccagtttcaccc
atgggtatgatgggcaacagaggacctcccggaccccctggaccccctggacctcaggga
cacaccggacaccctggtgagcccggcgagcctggacagactggtcccgttggtccccgt
ggcccacccggacctcctggcaaatctggagaggacggtaacaacggcagacctggcaag
cccggagacagaggtgcccccggccctcagggtgctcgtggattccccggaacccctgga
cttcccggaatgaagggacacagaggttacaatggcttggatggacgcaagggagagcct
ggtgccgccggagtcaagggtgaggctggcgcacacggagctgctggaagacccggactt
gttggacctcgcggtctggctggcgagagaggtcgcgccggccctgctggccctgttggt
gctcgtggtgctgatggcaacactggaccatctggtgctgctggacccgctggtgctgct
ggtgccccaggtttccccggtggccctggacccaagggagaggttggacccgttggtgct
accggtccctctggacctcagggagctagaggagagcccggtcccaatggagccgttggc
cccgttggtcccgttggtaaccctggtgctaacggcctgaacggagccaagggagccact
ggtgctgccggtgttgctggagctcctggattccccggacccagaggaggacctggacct
cagggacctcagggtgccgctggtcccagaggcctggctggagatcccggtgttcagggt
gtgaagggagatgttggtgccaagggtgagcctggtagcgctggacctcaaggagccccc
ggacctcacggtgaggagggcaaacgaggacccactggcgagattggagccgctggcccc
gctggtagccgtggatccagaggcgctcccggaagccgtggaatgcccggtgctgaggga
agagttggcccacttggtatgcctggtgctcgtggagccaccggctccgctggagctcgt
ggagcccctggagatgctggccgtgctggcgagcctggtcccgctggtgccaggggtctc
cacggaagccccggaagctctggaccccaaggaaaggagggaccttctggtcctgctgga
caagatggccgcaccggtcctcccggcccaactggacctagaggccagcctggaaacatt
ggcttccctggacccaagggacccgctggtgagcctggcaaacccggagagaagggagct
actggagccactggtctgagaggacctcctggccccgatggtaacaatggcgccactggc
cccatgggagtttctggcggtgctggtgagaagggagagcagggacctgctggatctcct
ggtttccagggtctgcctggacccgctggtgctgctggagaggttggcaagcccggagac
agaggtatcccaggagaccagggagtcgccggacctgctggtgtcaagggcgagcgcggt
aaccccggtgctgccggatctgccggacctcagggacctatgggagcccgcggagctact
ggagctcctggtgctgatggttcaaagggagagcctggcgttgtcggagttgtcggtgct
cctggacaccaaggagctagcggcatgcccggagagcgtggagctgctggccccgccgga
gtcaagggagagaagggagagcttggacacaaaggacccgacggcaaccctggaagagat
ggtgcccgtggtctccccggagctggtggcccccctggtcccacaggagccaatggtgac
aagggtgagagtggatctttcggacccgctggaccttctggagtccgtggtgcccctggt
gagcgtggagaggttggacccgctggagcccctggattcgctggacctcctggcgctaat
ggacagaccggagcaagaggagagcgtggacctgccggaggaaagggagatgttggcccc
gccggccctgctggacccgctggacagtctggacctgctggtccttctggccctgctgga
cctactggcgcccgtggagacaacggacctcagggtctgactggtttccctggagctgct
ggcagaattggccccgctggacctgctggtattgtcggacccgctggccctgctggtccc
gctggtaaagatggtccccgtggtatgcgtggagacgttggtcccgctggccccgctgga
gagcagggtatggttggaccttctggccccgctggagataagggaccttctggagagtct
ggacctgctggtgctcctggtgctcctggagtttctggacctcttggtcttcaaggattt
gttggtcttcctggcgctagaggcgatcgtggtagccccggtggtcccggtgctgtcgga
gagcccggtagacttggacctgctggtcccgctggtgcccgcggccccgctggcaacatt
ggtatgcctggtatgaccggacctcaaggagaagctggacgtgagggtaacactggtaac
gatggacctcctggtcgtcctggtgctgctggagtcaagggagaccgtggtgaccccggt
cccgctggtgttttgggaattgctggtgcccccggacctgctggccccagcggagctgtt
ggaagacctggaaaccgtggagactctggctttaccggaccttctggacccgccggagcc
gctggagctagaggtgccgctggacccgctggagtccgtggcgagaagggagttggtgga
gacaagggagagatgggaatgaagggtcttcgtggacaccctggtctccagggaatgcca
ggacctgctggtgcccctggtgacaccggacctgctggtgctcatggacctgctggaccc
agaggtcccgccggaccccacggacctcctggtaaggatggtagagctggtgcccatggt
actattggtgctcccggtgctcgtggagcccctggacacatcggccctgttggtccccct
ggacctcccggtctgcctggacctcccggcgctgctggtggtagctacgatctgtctgga
tacgatgagtacagagctgaccagcccgccatgagagccaaggattacgaagttgacgcc
accatcaagtccctcaacactcagattgagaacctgctcacccctgagggatccaggaag
aaccctgcccgcacatgccgcgacatcaagctcggccaccccgaatggaccagcggattc
tactggatcgaccccaaccagggttgcatcaatgacgccatcagggtcttctgcgacttc
gccacccgcgagacttgcatccatgcccaacccgagagcattgccaagaagaactggttc
agaagcacagagaacaagaagcacgtctggtttggagagaccatcaatggcggaactgag
ttcacctacaatgacgagaccatcagctctcagagcatggccacccagctggccttcatg
cgcctgctgtccaaccaggctagccagaacatcacctaccactgcaggaacagcgttgcc
tacatggatgctgagagcggcagcctgagcaaggctgtggtgcttgccggctccaacgat
gtggagctgagggctgagggcaacagccgtttcaccttctctgtggtggaggacggttgc
actagacacactggtgagtggagcaagacagtgattgagtacagaacaaataaaccatct
cgcctgcccatcctcgacattgcacctatggacattggtggagctgatcaggagtttggt
ttggacattggcccagtctgtttcaaataa
DBGET
integrated database retrieval system
