Hippocampus comes (tiger tail seahorse): 109527849
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Entry
109527849 CDS
T04969
Symbol
skiv2l2
Name
(RefSeq) superkiller viralicidic activity 2-like 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
hcq
Hippocampus comes (tiger tail seahorse)
Pathway
hcq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hcq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109527849 (skiv2l2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hcq03019
]
109527849 (skiv2l2)
03041 Spliceosome [BR:
hcq03041
]
109527849 (skiv2l2)
03009 Ribosome biogenesis [BR:
hcq03009
]
109527849 (skiv2l2)
03016 Transfer RNA biogenesis [BR:
hcq03016
]
109527849 (skiv2l2)
Enzymes [BR:
hcq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109527849 (skiv2l2)
Messenger RNA biogenesis [BR:
hcq03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
109527849 (skiv2l2)
Spliceosome [BR:
hcq03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
109527849 (skiv2l2)
Complex C
U4/U6.U5 tri-SnRNP related factors
109527849 (skiv2l2)
Ribosome biogenesis [BR:
hcq03009
]
Eukaryotic type
Pre-60S particles
Helicases
109527849 (skiv2l2)
Transfer RNA biogenesis [BR:
hcq03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
109527849 (skiv2l2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
109527849
NCBI-ProteinID:
XP_019745528
LinkDB
All DBs
Position
Unknown
AA seq
1015 aa
AA seq
DB search
MLCLHRNHITLEAGKVASLNNDDDAPPAAKTKRELPDSDGGEELGFGKKPRLDTVSANDL
NLSEFMPQVKVEPVETAEGCSHEVALPASDEYKPLKSRVGNAAKEYPFILDPFQQEAILC
IDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIKALSNQKYREMYEEFQDVG
LMTGDVTINPTASCLVMTTEILRSMLYRGSEIMREVAWVVFDEIHYMRDAERGVVWEETI
ILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVVYTDYRPTPLQHYVFPAGGDGLHL
VVDENGDFREDNFNTAMQVLRDTGDSGSSNAGSKWDPKGRKGGTKGPSSVFKIVKMIMER
NFQPVIIFSFSKKECEAYALQVAKLDFNKEEEKRLVEEVFNNAVDCLSDEDKKLPQVEHV
LPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFTSARKF
DGKNHRFITSGEYIQMSGRAGRRGMDERGIVIFMVDEKMSPSVGKQLLKGSADPLNSAFH
LTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRALPGVVESKLEEEYHAIEIPNEESVVTY
FKIRQQLAKLGKEIQEFIHKPKYCLPFLQPGRLVKVKNEDADFGWGVVVNFSKKSNVKVS
TDAEPLFVAEVLLHCSKNSVKEAATEAAKPAPPGQTGEMQVVPVMLHLLTSISSVRLYIP
KDLRPFDNRQLMLKSIQEVQKRFPDGIPLLDPVDDMGIKDAGLKKVIQKVEAFEHRMYSH
PLHSDPNLEAVYSLCEKKALIAGDVRTAKRELKKARTVLQIDKLKCRKRVLRRLGFASPS
DVIEVKGRVACEISSADELLLTEMVFNGLFNDLTVEQATALLSCFVFQENASEMPKLTEQ
LAAPLRQMQECAKRIAKVSADAKLEVDEDTYLSSFKPHLMDVVYAWANGATFAQICKMTD
VFEGSIIRCMRRLEEVLRQMCSAAKAIGNTELENKFAEGITKIKRDIVFAASLYL
NT seq
3048 nt
NT seq
+upstream
nt +downstream
nt
atgttgtgtctgcaccgaaaccacattactctcgaggcggggaaagtagctagtctaaat
aatgacgacgatgctcccccggctgccaagaccaagagggagctgccggacagtgacgga
ggagaggagctgggcttcgggaagaaacctcgcctcgacacggtctccgccaatgacctc
aatctttcagaatttatgccccaagtcaaagtggagccagtggagacggcggaaggctgc
tcacatgaggtcgctctgcctgccagtgatgaatataaacctctcaaatctcgagtcgga
aatgccgcaaaggagtaccctttcattctggacccctttcagcaggaggccattttgtgc
attgacaacaaccagtcggtgcttgtctcggcacacacctcggctggcaagaccgtctgt
gctgagtacgccatcgcgctggccctgcgcgagaagcagcgtgtcatctttaccagcccc
atcaaggcgctgtccaatcagaagtaccgggagatgtacgaggagtttcaagacgtgggc
ctgatgacgggggatgtcaccatcaaccccaccgcctcttgcctcgtcatgacaacagag
atcctgaggagcatgctgtaccgcggctcggagatcatgagggaagtggcgtgggtcgtc
tttgacgagatccactacatgagagacgccgagcgcggtgtggtgtgggaggaaaccatc
attctgcttccagacaacgtgcactacgtcttcctgtcggccaccatccccaacgccagg
cagtttgccgagtggatatgtcaccttcacaagcagccgtgccacgtggtctacacagac
tacagaccgacaccgctgcaacactacgttttcccagcaggaggcgatggactccacctt
gtggttgatgagaacggagacttcagggaggacaacttcaacacagccatgcaggttttg
agagacacgggggattccggaagcagcaatgcggggtccaagtgggatccaaaaggacgc
aaggggggaacaaaaggtccgtccagcgtgttcaagatcgtgaagatgatcatggagagg
aacttccagcctgtcatcatcttcagcttcagcaagaaggaatgtgaggcgtatgctctg
caggtggccaagctggatttcaacaaggaagaggaaaagcgtcttgtggaggaagtgttc
aacaacgcggtggactgcctgtcagacgaggacaagaagcttcctcaggtggagcacgtg
ctgccgctgttaaaaagaggcatcggtatccaccatggcggtcttctgcccatcctgaag
gaaaccattgagatcctcttctcggaaggcctgatcaaggcgctctttgccactgagacg
tttgccatgggcatcaacatgccggcgcggaccgtgctcttcaccagcgcccgcaagttc
gacggcaagaatcaccgctttattacctcaggcgagtacatccagatgtcagggcgtgcg
ggcaggagaggaatggacgagagaggcatcgttattttcatggtggatgagaaaatgagt
ccgtctgtggggaaacagctccttaagggctcggccgacccgctgaacagcgccttccac
ctgacgtacaacatggtgctcaacctgctgcgcgtggaggagatcaaccccgagtacatg
ctggagaaatccttctaccagttccagcactaccgagctctgcccggcgtcgtcgagagt
aagctcgaggaggagtaccacgcgatcgagatccccaacgaggagagcgtagtcacctac
ttcaagatccgccagcagctggccaagctgggaaaggaaatccaggagttcatccacaag
cccaaatactgcttgcctttcctgcagcccgggcgcctcgtcaaggtgaaaaatgaagac
gcagacttcggctggggtgtcgtcgtcaacttctccaagaagtcaaacgtgaaggtcagc
acggacgccgagccactctttgtggccgaggtgctgttgcactgcagcaaaaacagcgtc
aaggaggcggccactgaggcggccaaacctgctccgccaggccagacgggagagatgcag
gtggtccctgtgatgcttcacttgctgacgtccatcagctccgtgcgtctgtacatcccc
aaagacttgagaccctttgacaaccgccagctcatgctcaagtccatccaggaagtgcaa
aagcgtttcccagatggaatccctcttctggaccccgtggacgacatgggcatcaaggac
gccgggctgaagaaggtgatccagaaggtggaggctttcgagcaccgaatgtactcgcac
ccgctgcacagcgaccccaacttggaggccgtctactcgctgtgcgaaaagaaggctctg
atcgcgggggacgtgcgcacggccaagcgcgagttgaagaaagctcgcaccgtgctgcag
atagataagctcaagtgccgcaagcgagtgctccgacgcctcggcttcgccagcccgtcc
gacgtcatcgaggtgaaggggcgagtggcctgtgagattagcagcgctgacgaactgctg
ctgacggagatggtgttcaacggcctcttcaacgacctgacggtggaacaagccaccgcg
ctgctctcctgcttcgttttccaggagaatgccagcgagatgccaaaactgacggagcaa
ctggccgcccccctcagacaaatgcaggagtgcgccaagcgcatcgccaaggtgtcggcg
gacgccaagctggaggtggacgaggatacctacctgagctcgttcaagcctcacctcatg
gatgtggtctacgcgtgggccaacggcgccaccttcgcgcagatctgcaagatgaccgac
gtctttgaaggaagcatcatccgctgcatgcggcgtctggaggaagtgctgcgacaaatg
tgctcggccgccaaagccattggcaacacggagctggagaacaagtttgccgaaggaatc
acaaagatcaagagggacattgtgtttgctgccagcctctatttgtaa
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integrated database retrieval system
