Hippocampus comes (tiger tail seahorse): 109528470
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Entry
109528470 CDS
T04969
Name
(RefSeq) embryonic polyadenylate-binding protein-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
hcq
Hippocampus comes (tiger tail seahorse)
Pathway
hcq03015
mRNA surveillance pathway
hcq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hcq00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109528470
09123 Folding, sorting and degradation
03018 RNA degradation
109528470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hcq03019
]
109528470
03041 Spliceosome [BR:
hcq03041
]
109528470
Messenger RNA biogenesis [BR:
hcq03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
109528470
mRNA cycle factors
Stress granule specific factors
109528470
Spliceosome [BR:
hcq03041
]
Complex C
Other components
Complex C specific factors
109528470
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_Nup35
RRM_5
RBD_DEAH11
RRM_occluded
RRM_3
RBD_RDR6
Motif
Other DBs
NCBI-GeneID:
109528470
NCBI-ProteinID:
XP_019746685
LinkDB
All DBs
Position
Unknown
AA seq
654 aa
AA seq
DB search
MPTAIQLSGCLKAPSTTMNSSGPTYPLASLYVGDLHPDVTEAMLYQKFSPAGPIMSIRVC
RDIITRRSLGYAYINFQQPADAECALDTMNYDVLKGRPIRIMWSQRDPGLRKSGVGNIFI
KNMDDTIDNKALYDTFSAFGNILSCKVVCDEKGSKGYGFVHFETQEAANRAIKTMNGMLL
NDRKVFVGHFKSRKDREQEFGTKAMKFTNVYIKNFGEDYTDDNLKDVFSAFGKTLSVRVM
KDEQGCSRGFGFVNYANHEDAQKAVDEMNGKELNGKFLYVGRAQKRLERQGELKRRFDQI
KQDRIQRYQGVNLYVKNLDDSIDDERLRKEFSPYGTITSAKVMTDGSQSKGFGFVCFSSP
EEATKAVTEMNGRIIATKPLYVALAQRREERKAILTNKYMQRLATLRSMNSPLIDSYHQT
SYYVTVPQASTRTFYEHSAISNMRSAPRWTGQPPRVHGPYSSQYAGGSAPRQGSTPIATV
RQASTQAPRISSSTQKTNNIGTQTSCGRADMSGVSRSGQFKYPSAVRNPQQVISVPAMTR
LQVVPAPVMEQPVHAQGMEPLTASMLAAAPLMDQKQLFGERLYPLIHALHPSLAGKITGM
LLEIDNSELLHMLESPESLHCKVDEAIAVLQAHQAKVCSPKKWRQLSRRGVTLI
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgcccaccgcaattcaactttctgggtgtttaaaagctccgtcaacaacgatgaatagc
agcggaccaacctatccccttgcctctttgtatgttggggacctgcatcctgatgttaca
gaggccatgctgtaccaaaagttttctcctgctggaccaatcatgtcaatccgtgtgtgt
cgtgatatcatcacacggaggtccttgggatatgcctatataaacttccagcaaccggct
gatgcggagtgtgctttggatacgatgaactacgatgttctcaagggacgcccaatccga
attatgtggtctcaacgtgacccaggcctcaggaagtctggcgtgggcaacatcttcatc
aagaacatggatgacaccattgacaacaaggctttgtatgataccttctcagcctttggc
aatattttgtcctgcaaggtcgtttgtgatgaaaaaggctcaaaaggctacggctttgtt
cactttgagactcaggaagctgcaaaccgtgccattaagaccatgaatggaatgctgctg
aatgatagaaaagtttttgttggccacttcaagtctcgcaaggaccgagagcaggagttt
ggcaccaaagctatgaaattcaccaatgtctacattaaaaactttggtgaagactacact
gatgacaatctaaaagatgtcttttctgcatttggcaagactctcagtgtacgcgtgatg
aaggatgagcaaggttgttcgcgtggatttggctttgtcaactatgctaaccatgaagat
gcgcaaaaggcggtggatgagatgaatggtaaggagctcaacgggaagttcctctatgtt
gggcgggctcagaagaggctggagcgtcagggagagctgaagcgcaggttcgaccaaatc
aaacaggaccgcatccagcgctatcagggtgtcaatctgtatgtgaagaacttggatgac
agcatcgatgacgagagactccggaaggagttctccccctatggtaccataacaagtgca
aaggtcatgaccgatggctcccaaagcaaaggctttggttttgtctgcttttcttccccc
gaggaggcgacaaaagcagtaactgagatgaatggaagaattattgctaccaagcccctg
tacgtggcactggctcagcgaagggaggagcgtaaggccattctcaccaacaagtacatg
cagagactggccaccctgaggagcatgaacagtcccctcatcgactcgtaccatcagacc
agctattacgtgacagtgccgcaggcgtccacgcgcaccttctatgagcacagtgctatc
agcaacatgagatcggcgcctcgctggacgggacagccgccaagagtgcacggtccgtat
tcatcccaatacgctggcggctctgcccctcgccagggctccactcccatcgccactgtg
agacaggcctccactcaggctccacgtatcagcagttccacacaaaagacaaataacatt
ggaacccagacatcatgtggccgagctgacatgtctggtgtgtcaagaagcggtcagttt
aagtacccgtcggcggtgcggaaccctcagcaggtcatctctgtacccgccatgacaaga
ctacaggtggttcctgcccctgtgatggagcagcccgtacatgctcaaggaatggagcca
ctaactgcctcaatgttggctgcagcaccacttatggaccagaagcagctttttggtgag
cgtctgtaccctctgatccatgcccttcacccaagcctggctggaaaaatcactggaatg
ctgctagaaattgacaactcagagctgctacacatgctggagtcaccagagtccctccac
tgcaaggtggacgaggccatcgctgtcttacaagcccaccaggccaaggtctgctcgcca
aaaaagtggagacaactttctcgaagaggagtaacattgatttaa
DBGET
integrated database retrieval system
