Hippocampus comes (tiger tail seahorse): 109528540
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Entry
109528540 CDS
T04969
Name
(RefSeq) collagen alpha-1(II) chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
hcq
Hippocampus comes (tiger tail seahorse)
Pathway
hcq04510
Focal adhesion
hcq04512
ECM-receptor interaction
hcq04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
hcq00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
109528540
04518 Integrin signaling
109528540
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
109528540
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
hcq00536
]
109528540
Glycosaminoglycan binding proteins [BR:
hcq00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109528540
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
TILa
Motif
Other DBs
NCBI-GeneID:
109528540
NCBI-ProteinID:
XP_019746838
LinkDB
All DBs
Position
Unknown
AA seq
1490 aa
AA seq
DB search
MFSFVDSRTVLLLVASQLVLLAVVRCQEEVDQKAGGCIQDGQLYNDKDVWKPEPCQICVC
DSGTVLCDEIICEEMKECANPIIPSGECCPMCPVDASAHIETVAARGQKGEPGDIADVVG
PRGPSGPMGPPGDQGIRGPAGAKGDKGNAGPRGRDGEPGTPGNPGPAGPPGPPGAPGLGG
NFAAQMATGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGAPGEAGEPGAAG
AMGPRGPPGPSGKPGSDGEAGKPGKAGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLDG
AKGENGAAGAKGEAGASGENGAPGPMGPRGLPGERGRTGAAGAAGARGNDGLPGPAGPPG
PVGPAGAPGFPGSPGAKGEAGPTGARGAEGQQGPRGEAGTPGSPGPAGASGNPGTDGIPG
AKGSAGGPGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGLPGFKGEAGPKGELGPAG
PLGAPGPSGEEGKRGARGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVPG
AAGPKGATGDPGRTGESGLPGARGLTGRPGDTGPQGKVGPSGAPGEDGRPGPPGPQGARG
QPGVMGFPGPKGGNGEPGKPGEKGLLGRTGLRGLPGKDGETGSAGPPGPAGPAGERGEQG
QPGPAGFQGLPGPTGSPGEAGKPGDQGVPGEGGAPGAVGPRGERGFPGERGGAGPQGLQG
PRGLPGTPGSDGPKGAIGPAGAAGPQGPPGLQGMPGERGAGGIPGAKGDRGDNGAKGPEG
APGKDGSRGLTGPIGPPGPAGPNGAKGETGPAGPSGAPGVRGAPGDRGEGGPPGPAGFAG
PPGADGQPGVKGELGESGQKGEAGASGPQGPSGAPGPVGPTGVSGPKGARGAQGAPGATG
FPGAAGRVGSPGPNGNPGAVGPAGPAGKDGPKGARGDAGPQGRQGDAGLRGPAGAQGEKG
EPGEDGPPGADGPSGPQGLAGSRGIVGLPGQRGERGFPGLPGPSGEPGKQGSPGSGGDRG
PPGPVGPPGLTGPSGETGREGTPGSDGPPGRDGAVGIKGERGNAGPAGAPGAPGAPGAPG
PVGPLGKQGDRGESGAQGPAGPPGLAGARGMAGPQGPRGDKGESGEAGERGQKGHRGFTG
LQGLPGPPGPAGDSGASGPAGPSGAKGPPGPTGPAGKDGSNGQPGPIGPPGPRGRSGESG
PPGPPGNAGPPGPPGPPGPGIDMSAFAGLGQTEKSPDPLRYMRADEASSSLRQHDVEVDS
TLKSLNNQIENLRSPDGSQKNPARSCRDLKLCHPEWKSGDYWVDPNIGSTADAIKVFCNM
ETGETCVYPTIANVPKKSWWTSKSKDRKHIWFGETMNGGFHFSYAQDGPAANAASVQLTF
LRLLSNEASQNLTYHCKNSIAYMDQATGNLKKALLLQGSNDVEVRAEGNSRFTYSVLEDG
CKKHTGRWGKTVFEYKTQKTSRLPIVDIAPMDIGGADQEFGVDVGPVCFL
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggattcaaggactgttctgctacttgtagcatcccaacttgttttg
ctggcggtggtcagatgtcaggaagaagtggaccagaaggcaggtggctgcatccaggac
ggccagctgtataatgataaggatgtgtggaagccagagccgtgtcaaatctgtgtgtgt
gacagtggaacagttctgtgtgatgagataatctgcgaggagatgaaggagtgtgccaac
cctatcatcccatctggagaatgctgccccatgtgccccgttgatgccagtgcccacatt
gagacggtcgccgcaaggggtcagaaaggtgaaccaggcgatattgcagatgttgtagga
ccaagaggaccatcaggccctatgggccccccaggtgaccagggaatacgtggaccagct
ggtgcaaagggtgacaagggaaatgctggacctcgtggaagggatggtgagcctgggact
cctggaaaccccggacccgctggcccacctgggccacctggagcccctggacttggaggg
aactttgctgcacagatggcgacaggctttgacgagaaggccggaggtgctcagatggga
gtgatgcaaggaccaatgggtccaatgggtcctcgtggtcctcctggaccaagtggagcc
cctgggccacaaggtttccagggtgcccctggagaggctggagagcccggtgcagctggc
gcaatgggaccccgtggaccacctggaccttctggaaaaccaggaagtgatggtgaggct
ggcaaacctggcaaagctggtgagcgcggacctgctggaccccagggagctcgtggattc
cctggaactcctggccttcctggaatcaaaggacacagaggtcacccgggtctggatgga
gctaaaggagagaacggtgctgcaggagcaaagggagaggctggcgcttctggagagaat
ggtgcccctggacccatgggcccacgtggtctgcctggtgagaggggacggaccggtgct
gccggagctgcaggtgcccgtggaaatgatggcttgcccggtcctgctggtccacctggg
cctgttggtcctgctggagctcccggtttcccaggatccccaggagccaagggtgaagct
ggtcctactggagcccgtggagcagaaggccaacagggtccccgtggagaggctggtaca
ccaggatctcctggaccggccggagcatcgggaaaccccgggactgatggtattcctgga
gccaaaggatctgctggtggtcctggcattgctggtgcccctggcttccctggcccccgt
ggaccccctggaccacagggcgcaacaggccccctgggacccaaaggacagtctggtgac
cctggtcttcctggattcaaaggtgaagctggacccaagggagagcttggccccgctggt
cccctaggtgcacccgggccatccggtgaggaaggaaagcgaggtgcaagaggagaaccc
ggagctgctggaccacttggacctcctggagagcgaggagctcctggcaaccgtggtttc
ccaggtcaagatggtcttgctggcgctaagggtgccccaggtgaccgtggtgttcctggt
gccgctgggcctaaaggtgctacaggggatcctggacgcacaggagagtctggtcttcct
ggagcaaggggtctaactggccgtcctggagatactggtcctcaaggcaaagttggacct
tctggtgctccaggggaggacggtcgccccggccctcctggtcctcagggagcccgtgga
cagccaggagtgatgggatttcctggaccaaaaggaggcaatggtgagcctggaaagcct
ggagagaaaggtcttttaggtcgcactggtctgagaggcctgcctggaaaagatggtgag
actggatctgctggaccacctggccctgcaggacccgctggagagagaggagagcaaggt
cagcctggacctgctggcttccagggtctgcctggaccaactggttcccctggagaggct
ggaaaacccggagaccagggtgttcctggagagggtggagctcctggtgctgttggaccc
agaggtgaacgtggtttccctggtgagaggggtggtgctggtcctcagggtctgcaggga
cctcgtggacttcccggaacacctggaagtgatggacccaagggagccattggacctgct
ggagctgcaggaccccagggaccccctgggctgcagggaatgcccggagagagaggtgcc
ggtggcatcccaggagccaaaggagacagaggtgataatggagcaaaggggcctgaagga
gctcccggaaaggatggttctcgaggtttgactggtcccattggtcctcctggccctgct
ggacccaacggtgccaagggtgagactggacctgcaggaccctctggtgctcctggtgtt
cgtggcgctcctggtgaccgtggtgaggggggtcctcctgggcctgctggctttgctgga
cctcctggtgcagatggtcagcctggagtcaagggagagcttggtgagagcggacaaaaa
ggagaggctggtgcttccggacctcaagggccatcaggagcacctggacccgtgggtcca
actggtgtttctggacctaagggagcacgtggtgctcagggagctcctggtgccactggt
ttccctggtgctgctggtagagttggatctccaggccctaatggtaaccctggtgctgtt
ggacctgctggtcccgctggcaaagatggaccaaagggtgctcgtggtgatgcaggaccc
caaggaagacagggagatgctggtcttcgaggaccggctggtgcacaaggagaaaaggga
gaacccggagaagatggaccccctggtgctgatggaccttcagggcctcaaggtttggct
ggatctcgtggtattgttggtttgcctggacagcgtggagagagaggcttccctggtctt
cctggaccttctggtgagcctggtaaacaaggatctcctggctctggtggtgaccgtgga
cctcctggacctgtaggaccccctggacttactggaccttctggagagactggaagagag
ggtacccctggatcagatggaccacctggcagagatggagcagttggaatcaagggagag
cgaggtaatgctggtcctgctggtgcccctggagctcctggtgctcctggcgcccctggc
cctgtcggacctcttggcaagcagggagacagaggagagtctggtgcacaaggacctgca
ggacctcctggactcgctggtgcacgaggaatggctggacctcaaggaccacgtggagat
aagggagagagtggtgaggctggcgagagaggacagaagggtcaccgtggattcactggt
ctgcagggtctgcctggacctcccggtcccgctggagattctggggcttcaggaccggca
ggaccaagcggagctaagggaccacctggaccaactggacctgctggcaaagatggatct
aacggacaacctggccccatcggaccacctggacctcgtggacgctctggagaaagtggc
ccacctggtcctcctggaaacgctggaccccctggtcctcctgggcccccaggccctggc
attgacatgtctgccttcgctggtttgggtcagactgagaagtctcccgatccactgagg
tacatgagggctgatgaggcttccagttccctgagacagcacgatgttgaggttgattcc
acactgaagtcgctcaacaaccagattgagaacctgcgcagccctgacggctcccagaag
aaccccgctcgctcctgcagggacctcaaactgtgccaccctgagtggaagagtggtgac
tactgggttgaccccaacatcggaagcacagctgatgccatcaaggtcttctgcaacatg
gagaccggcgagacctgcgtctacccaactattgccaatgtaccaaagaagtcttggtgg
accagcaagagcaaggatcgcaagcacatctggtttggagagaccatgaatggaggattc
cacttcagctacgctcaggatggccccgctgccaacgctgccagcgttcagctgaccttc
ttgaggcttctttccaatgaggcatcccagaacctcacgtaccactgcaagaacagcatt
gcctacatggatcaggccacaggcaacctgaagaaggctttgctgctgcagggctccaac
gatgtggaggtccgtgcagagggcaacagccgcttcacatatagcgtgttggaggatggc
tgcaagaaacacacaggccggtggggcaaaactgtctttgagtacaaaacacagaaaacc
tcccgtctgcccatcgtggacattgctcctatggatatcggaggagcggatcaggagttt
ggcgtggatgtaggcccagtctgcttcttgtaa
DBGET
integrated database retrieval system
