Hippocampus comes (tiger tail seahorse): 109530180
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Entry
109530180 CDS
T04969
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2 isoform X1
KO
K08735
DNA mismatch repair protein MSH2
Organism
hcq
Hippocampus comes (tiger tail seahorse)
Pathway
hcq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hcq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
109530180 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hcq03400
]
109530180 (msh2)
DNA repair and recombination proteins [BR:
hcq03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
109530180 (msh2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
AAA_27
Motif
Other DBs
NCBI-GeneID:
109530180
NCBI-ProteinID:
XP_019749319
LinkDB
All DBs
Position
Unknown
AA seq
924 aa
AA seq
DB search
MAVQPKQNLSMDSASEHAFLNFFFSMPEKPDTTFRIFDRSEYYTVHGKDAAFAAKEVFKT
NAVIKHLGSGSRKLDSVVLSKLNFEAFVKDLLLVRQYRVEVYRNHSKNSKEQDWKIEFKA
SPGNLTQFEEILFGGGNGAEGCTGVVAVRAASGVVAVGYVDATQRTMGVCEFPDNEVFSN
LESLLIQVGPKECLLSQGEGSKLREVVQRGGVLVSERKRTEFDSKDVVQDLNRLLRAKRG
ETVASNTLPELDKQVAMSCLAAVVRYLELLSDESNFNSFSLTSLELGQYMRLDSAAVRAL
NLFQGAPDDTSGAHSLAGLLNKCRTPQGQRLVNQWIKQPLLDTTKIEERLDLVESLVCDS
ELRQTCQEDILRRFPDLQRLAKKFHRRSATLQDCYRVHQAVDQIPALITALARYSGNHEV
LLEAVLISPLRDLQGDFSKYQEMIETTLDMNQIEHHEFLVKASFDPVLSELREKMDAMEK
SMQAVLNAAARELGLDAGKTVKLESSGVLGFYLRVTCKEEKNLRNNKTFSTLDVQKNGVR
FTNGKLSALNEDYGRSREEYEEAQNAIVKEIINIASGYVDPLQTLGDVVALLDAVVSFAT
ASVTAPVPYVRPRLLPDGPRRLELRQARHPCMETDADTCFIPNDVTFVQGEKSFYIITGP
NMGGKSTFIRQVGVIALMAQIGCFVPCEEAELSVIDGILARVGAGDSQVKGVSTFMSEML
ETAAILRSATEKSLVIVDELGRGTSTYDGFGLAWAISEHVAAEIGCFCLFATHFHELTAL
AAQRPAVRNLHVTALTSQNTLTMLYRVKPGVCDQSFGIHVAELACFPPSVVAMAKEKAQE
LEEFQESAASAREDEPDAKRRRSDKQVGEDLIRDFLEEAKCLPAAAMTEEEVRAALRRMK
MVLLGKNNAYVSELLAHSLPVIQS
NT seq
2775 nt
NT seq
+upstream
nt +downstream
nt
atggctgttcagccaaaacaaaacctgtccatggacagcgcgtccgaacacgccttcctc
aacttcttcttctccatgccggagaaaccggacacaactttccgtatattcgaccgcagc
gagtactacacggttcacgggaaagacgcagcgttcgccgcgaaagaagttttcaagacg
aacgccgtcatcaagcacttgggctccgggagtcgtaagttggacagcgtggtgttgagc
aagctcaactttgaggcttttgtgaaggacctgctactggtcaggcagtaccgcgtcgag
gtgtacaggaaccacagcaagaacagcaaggagcaagactggaagattgagttcaaggcc
tctccaggaaacctcacccagttcgaagagattctgtttggcggcggaaatggtgctgaa
ggctgcacgggtgtggtggctgtgcgtgcggcgtccggcgtggtggccgtgggctacgtg
gatgcgacgcaacgcaccatgggcgtgtgcgagttccccgacaacgaggtcttttccaac
ctagagtcgctgctcatacaggtcggccccaaggagtgtcttctgtctcaaggagagggc
agcaagctacgggaggtggtgcagcgcgggggcgtgctggtgtcggagaggaagcgaaca
gagttcgatagcaaggacgtggtccaggacctcaacaggctgctgagagccaaacgggga
gagacggtggccagcaacaccctcccggagctcgacaaacaggtggccatgtcctgcttg
gccgcagtggtgcgctacctggagcttctctccgacgagtccaacttcaactccttcagc
ctgacctcactggagctgggtcagtacatgaggctggacagcgctgctgtcagggcgctc
aacctcttccagggtgcacctgatgacaccagcggggctcactcattggccggacttttg
aacaagtgtcgcacacctcagggccagcgactggtcaaccagtggattaagcagccgctc
ctggacacgactaaaatcgaggagaggctggacctggtggagagtttggtgtgcgattca
gagctgaggcagacgtgccaggaggacattttgcggcgcttccctgacctccagcgactg
gccaagaagttccaccgccgcagcgccaccttacaggactgctaccgcgtgcaccaggcc
gtcgaccaaatccccgcactcatcaccgcactggctagatattcgggcaaccacgaggtc
ctgctcgaggcggtcttgatctccccgctcagggacctgcagggtgacttcagcaagtac
caggagatgatcgagaccaccctggatatgaaccagattgaacaccacgagttcctggtg
aaagcctcattcgatcccgtgttgagtgaactgcgggagaagatggacgccatggagaag
agcatgcaggccgtgctcaatgccgcggcaagggagctaggtttggacgctggcaagacg
gtgaagctggagtcgagcggcgtgctgggcttctacctgcgtgtcacctgcaaggaggag
aagaacctgaggaacaacaaaacgttcagcacactggacgtgcagaagaacggcgtgcgc
ttcaccaacggcaagctgagcgctctcaacgaggactacggccgcagcagggaggagtac
gaggaggcgcagaatgccatcgtcaaagagatcatcaacatcgcttcaggctacgtggac
cctctgcagacccttggagatgtcgtagcgctactggacgcagtggtcagctttgccacg
gcgtcggttaccgcccctgtgccttacgtacgtcctcgcctgctgcccgacgggccccgt
cgcctggagctgcggcaagcgcgccacccctgcatggagacggacgccgacacttgcttc
atacccaacgacgtcacgtttgtgcagggggagaagagcttctacattatcacaggccca
aatatgggcggaaagtcgacgttcatccgtcaggtcggggtcatcgctttgatggcacaa
atcggctgcttcgtgccgtgcgaggaggctgagctgagcgtgattgacggcatccttgcc
cgggtgggggcgggagacagccaggtgaagggcgtgtccaccttcatgtctgagatgctg
gagacggcggccatcttgcgctccgccacggagaagtcgctggtcatcgtggacgagctg
ggccgcggcacgtccacctatgatggctttggcctggcctgggccatcagcgagcacgtc
gccgccgagatcggctgcttctgtctgttcgcgacgcacttccacgagctgacggcgctg
gcggcgcagcggcccgccgtgcgcaacctgcacgtcacggcgctgacgtcccagaacacg
ctcaccatgctctacagagtcaagccaggtgtgtgcgaccagagtttcgggatccacgtg
gcagagttggcttgtttccccccgtcggtagtcgccatggccaaggagaaggcccaggaa
ctggaggagtttcaggagtcggcggcatctgccagagaggacgagcccgatgccaagagg
cgacgcagcgacaaacaagtcggagaagacttgatccgagacttccttgaggaagccaag
tgtctccctgccgccgccatgacggaggaggaggtgagggcggcgttgaggcgcatgaag
atggtgctgctcggcaaaaacaatgcgtacgtctctgagctgctcgcgcactcacttcct
gtcattcagtcttga
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