Hippocampus comes (tiger tail seahorse): 109530429
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Entry
109530429 CDS
T04969
Symbol
edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
hcq
Hippocampus comes (tiger tail seahorse)
Pathway
hcq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hcq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109530429 (edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hcq03019
]
109530429 (edc4)
Messenger RNA biogenesis [BR:
hcq03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109530429 (edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
109530429 (edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_EDC4L
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_Prp19
WDR55
Beta-prop_TEP1_2nd
GCP5-Mod21_C
COG4_C
Sey1_3HB
DUF445
Motif
Other DBs
NCBI-GeneID:
109530429
NCBI-ProteinID:
XP_019749696
LinkDB
All DBs
Position
Unknown
AA seq
1386 aa
AA seq
DB search
MAFSASIDVEGATQHLRDILKLDRPGNSTDAESGDGQRRLSFNGELNGLLGAAGLLGGGD
LTSDTTRPLSAVNSIAQDIQIIRLSGDDQSTCIPITSDNVEIVASQESSINSKARGSNMV
KIQPVAKYDWEHKYHYGRLIAVSNSFMAYAIRGANNQAMIRVLSVGTAERCLLKGFTGAV
TDLAFAHLDSPLLGCVDEAGNLMVWELTCTSSTILDQIVVHVRRPQDSPLNSHRRLIWCP
FIPDENEDNQDDNSQTLALLHEDRAEVWDLEILRANNAIWPIYATDLKEGLITVKGYTQR
VSEGALSPDGTVLATASHDGYIKFWQIYIEGGQDKPRCLHELRPHGGHPLSCLLFCDNHK
RQDPDVPFWRFLITGADQNQELKMWCTVSWTCLQTIRFSPDPVNLTVLPSLKASLDLSAG
YLILSDVQRKVLYVMELRQDLEKGKASFTAVSEFLLTHPVLSFGVQDVAQSRLRHTEVLP
AEEESESTTTEGAQGPTESKSGIQIKLYCVHTKSLQDVQIWFQPNAGSNSPGMLHSDPPD
GFGFSAHLTDQSSDKDSGSGSQTDLSNIASLPAPTDFLSNTANGNGQMPKLMTPDAFMTL
STSVPASPGSSASSLTIVTAIGDSANRTSDDISQSPSRADNSLSLPVSSSSPRPASTVLP
GLETIQTVASPSTPVVLDSPQVLDSQLMPPLASPTRARSPDVISSASTVMSQDIPEIASQ
TLQLQRGLVSTLDSLPLSALQADSMASAASALHLLTSPRSANSNSLLPLELGCVDGPVGG
SLELEPRLSQTPSLLENALSQDNPVLAGGSTENTISHTSWPAAPDITRETRNRENSLGDC
SRDDSNDRLLSSPYACRSYCLSQNDSQDPGAEQSPSLFGFSDPEDEVAGSASSSANCGTR
SSHRIPVKDWKTSPRASPKLKRKTKKDERESPQSRHLDSGQMNTDVQQELLMFLRGQQRE
LTELRGQIEAMQSSIMAQVERALTNHQEQERCRLERVLGESLNQQHHQKQLSQQLSQTLC
NSLTNKMDKILREEMKKTVPPTISKSLEPVTSQLSNTISSKLTSVEVTLKDNVSKVVKSK
NTTDAIGRAAAEAMQGPIQAAYKDAFQSIVLPVFERGCQTMFQQINESFKQGTQEYIQQL
EAHAKGKKQREQETRDPMIDQLQHMLDGFQSSTDQLANSITANIRAEIQHQIQMMVGNMQ
ESILSHVQRIVKGEVSLAMKEQQAVVTSSIMQAMRSAAGTPVPTAHLDYQTQQSNILHLL
QQGQLNQAFQQALSATDLNLVLYVCETIDSQQVFGQQPCPLSQPVLLSLIQQLSSNLNTR
SELKISYLEDALMNLDHGDPRTRDHMASVLTQVRPKFFAFMQQDPHSPLTKRARRLMLIL
QGLVNH
NT seq
4161 nt
NT seq
+upstream
nt +downstream
nt
atggcgtttagcgctagtattgatgttgagggtgcaacacagcatctccgggatatcctg
aagctcgaccgtcctggtaacagtactgatgcagaatcaggtgatgggcaaagaaggttg
tcctttaatggagaactgaacgggctattgggagcagcaggtcttctcggaggcggcgat
ttaacatcagacacgaccagacctctctctgcagtgaacagtattgctcaggatattcag
ataattcgcctttctggtgatgatcagtctacctgtatccccatcacctcggacaatgtg
gagattgtggcgagtcaggaatcaagcatcaatagcaaggctcgaggcagcaacatggtg
aagattcagcctgttgccaaatatgactgggagcacaagtatcattatggcagacttatt
gctgtgtcaaattccttcatggcatatgcaattagaggagccaacaaccaggctatgata
cgcgtcttgagtgtcggcactgcagagcgttgcttactgaaaggcttcactggtgccgtc
acagatctggctttcgcccaccttgactcgcctctgttgggttgtgtagatgaagctggc
aacctaatggtttgggagctcacatgtaccagcagtacaatactagatcagatagttgtt
catgtccgaaggccacaggactcgccactgaactcacatcggcgtctcatctggtgccct
tttattccagatgaaaatgaagacaaccaagatgacaatagccagaccttggctcttcta
catgaagatagggctgaagtgtgggaccttgaaattttgagggccaacaatgctatttgg
cctatttatgccacagatttgaaagaaggcctcattacagtgaaaggatatacccagcgt
gtcagtgaaggtgccctatctccagatggaacagtgttagccacagccagccacgatgga
tacatcaagttctggcagatatatatagaaggggggcaggacaagccaagatgtctgcat
gaacttcgtccacatggtggacatcccctttcctgccttctcttctgtgacaaccacaaa
aggcaggaccctgacgttccattctggaggtttcttataactggagccgatcagaaccaa
gaattaaagatgtggtgtactgtttcctggacttgtttacagaccatcagattctctcca
gatccagtgaatctgacagttctgcctagtcttaaagcaagtttggacctgtctgctggg
tatctcatcctttccgacgtacagaggaaggttctttatgtgatggagctgagacaagat
ctggaaaaaggcaaggcatctttcactgctgtgtcagagtttctactcacccatcctgtg
cttagctttggagttcaagatgttgcccaaagccgtttgcgacacactgaagttcttcct
gcagaggaggagagtgagagcacaacaacagagggcgctcaagggcccacagagtccaaa
tctggcatccagattaaactgtactgtgttcacaccaagagtctgcaggatgttcaaatc
tggttccagcctaatgcgggctccaactctccaggcatgctccattctgatcctccagat
ggttttgggttctcagcccatctgacagaccagagttctgacaaggactcagggagtggc
tcccagaccgacctgagcaacatagcatcacttcctgcacctactgacttcctgtcaaat
actgcaaatggcaatgggcaaatgccaaaattgatgactcctgatgccttcatgacacta
agcacttcggtgcctgcatctcctggcagtagtgccagtagtctgacaattgtgacagca
atcggcgactcggccaatagaacttctgatgacattagtcagagtcctagccgggcagat
aacagtttgtcacttccggtttccagtagcagtccaagacctgcttccactgtcctgcct
ggactggagaccatacagacagtggcatcccctagcactccagttgtgctggacagccct
caggttcttgattctcaactcatgccaccacttgcctccccaactagggcccgctcccct
gatgttatctcctcagcctccacagtcatgtcccaggacattccagagattgcatcccag
accctgcagcttcagcgtggtcttgtgtccaccttggactctttacctctgtctgctctt
caagctgatagtatggcctctgctgcttctgcccttcacttgcttacttcaccacgctca
gctaacagcaacagcctgttgccccttgagcttggatgtgtagatggtcctgttggaggg
tctttagagttggagcccagacttagccaaacgccatctctcctggagaatgctttatct
caggataaccctgttttagcaggaggttctacagagaacaccataagccacacctcttgg
ccagctgctcccgacatcaccagggaaaccaggaatcgagaaaatagtcttggagactgc
tcaagagatgattcaaacgacagactcctgagttcaccctacgcatgtcggtcatattgc
ctctcacagaatgacagccaggatcctggtgctgagcagagtccctcattatttggattt
agtgaccctgaggatgaggttgcgggttcggcatcatcttctgcaaattgtggcacacgt
tcctctcacagaataccagttaaagactggaaaacctcacccagagcctcaccaaagctg
aagagaaagaccaaaaaagatgagagagaatcacctcagtcgagacatttggactccggt
cagatgaatacagatgtgcagcaagagttgttgatgtttctccgaggccaacagagagag
ttaactgaactacgtggacaaattgaagccatgcaaagctctattatggcccaagtagaa
cgtgcattgactaaccatcaggaacaagaacggtgcagactagagcgggttctgggagag
agtctgaatcagcagcatcatcagaaacaactcagccagcagctgagccagaccctttgc
aattccctaactaacaagatggacaaaatccttcgagaggagatgaagaaaactgttccg
ccaaccatttcgaagagtctggagccagtgacatctcaactgagcaacactatttcttct
aaactgacctctgtcgaggttaccctgaaggacaacgtcagtaaggttgtcaaatccaag
aacaccacagatgcaattggccgagccgcagcagaagcaatgcaaggtcctattcaggct
gcctacaaagatgccttccagagcattgtgctgcctgtttttgagagaggctgtcagacc
atgtttcagcaaattaatgaaagtttcaagcaaggaacacaagaatatatacagcagctt
gaggcccatgcaaaaggcaaaaagcagagagagcaggaaacgcgagaccccatgattgac
caactgcaacatatgttggacggcttccaaagctccaccgatcaactggccaatagcatc
acagcgaacatccgggctgagatccaacatcaaatccagatgatggtggggaatatgcag
gagtcaattcttagtcatgtacagcgtattgtcaaaggtgaggtgagcctggcaatgaag
gagcagcaggcagtggtcacctccagcattatgcaggcaatgagatctgcagcagggact
cccgtcccaaccgcacatctagactatcagacacagcaatctaacatcctgcacctcctt
cagcaaggacaactcaaccaggctttccagcaggctctgtcagcaacagatctgaacttg
gtcttgtacgtgtgcgagactatcgactctcagcaggtgtttggacaacagccgtgtccg
ctcagccagcctgtgctgctgtcactcatacagcagctctcatccaacctcaacacccgc
tctgagctaaaaatcagctatttggaggacgcattgatgaatctggaccacggtgatcct
cgaacaagagaccacatggcctccgtgctgacccaggtcagaccgaagttcttcgcattc
atgcagcaggatccccacagccctcttaccaagagagctcggcgtctcatgctgatactc
caaggacttgtcaaccactag
DBGET
integrated database retrieval system
