Hippocampus comes (tiger tail seahorse): 109530830
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Entry
109530830 CDS
T04969
Symbol
cftr
Name
(RefSeq) LOW QUALITY PROTEIN: cystic fibrosis transmembrane conductance regulator
KO
K05031
cystic fibrosis transmembrane conductance regulator [EC:
5.6.1.6
]
Organism
hcq
Hippocampus comes (tiger tail seahorse)
Pathway
hcq02010
ABC transporters
hcq04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
hcq00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
109530830 (cftr)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
109530830 (cftr)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
hcq02000
]
109530830 (cftr)
Enzymes [BR:
hcq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.6 channel-conductance-controlling ATPase
109530830 (cftr)
Transporters [BR:
hcq02000
]
ABC transporters, eukaryotic type
ABCC (CFTR/MRP) subfamily
ABCC7 subgroup
109530830 (cftr)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CFTR_R
ABC_membrane
ABC_tran
AAA_21
DUF87
RsgA_GTPase
SMC_N
AAA_29
AAA_16
nSTAND3
T2SSE
AAA_23
MMR_HSR1
FtsK_SpoIIIE
NB-ARC
MeaB
Zeta_toxin
AAA_30
Mg_chelatase
nSTAND1
Motif
Other DBs
NCBI-GeneID:
109530830
NCBI-ProteinID:
XP_019750288
LinkDB
All DBs
Position
Unknown
AA seq
1425 aa
AA seq
DB search
METLSSSPVVMEASKTVQPQLLGRIIASFDPFHAPERSQGYFLALGLCLLFTARFLLLQP
AIFGLHHLGMQIRIALFSLIYKKTLKLSSRVLDKISTSQLVSLMSAHLNKLDESLGLAHF
VWITPLQCILCVGLIWELIEVNGFCALAALTLLGIVQACLAQKMGPHRVKRAGMTNRRLA
LTSEIVENIHSVKAYGWEEVMETIIKNIRQXTILLTRKIGSLRYFYSAAYFFSAILVIVS
AIVPHALGKGIILRRIFTTASYCMVLRMTLTRQLPGSIQMWYDTLALVNKLEDFLMKEEY
RVLEYNLTTTELELINVSASWDEGIVELFEKIKQESKASGHANGGLFFTNLYVTPVLKNI
SLYLEKGKMLAVAGSTGSGKSSLLMLILGELMPSEGKIRHSGRVSFSSQTSWIMPGTIRD
NILFGLTYDEYRYTSVIKACQLEEDFALLPDKDKTLLGEGGVTLSGGQRARLGLARAVYK
DADLYLLDAPFTHLDIVTEKEIFEKCVCNLMSSKTRIVVTSKLEHLKRADQILLLHNGDC
YFYGSFSELQAQRPDFSSLLLGMEAYDNVNAERRGSILTETLRRVSVDESAGFRGPEPRR
HSFRHPPPPPIITGPQGGCDGYPEKRKQSLILNPLAAARKFSFIGQQNATGAPPASMEDT
VRELSERKFSMVPEDDQVEEVLPRGNLYHHGLPHLSGQRRQSVLAFITATQGHERHEQMQ
TSFRKKVSIAPSHCDLPSDMDIYSRRLSKDSVYDISEEVDEEDMEQCFADERENAFETTS
WSTYLRYVTTNRSLVYVLIFIFLVFVIEVAGSVIGIYLITDTIWRDGANPSSPNYIDEQH
PNTSSPPTHLAVIVTPTSAYYIIYIYVATSESVLALGFFRGLPLVHTLLTVSKRLHDQML
SSVLRAPMALLNTMKTGRIMNRFTKDMATIDDMLPLVLFDLIQLSVIVLGAIFTVSIIRP
YIFIAAIPLAVVFVILRKYFLRTGQQLKLLEAEARSTIFSHVIISLKGLWTIRAFGRQTY
FEMLFHKALNTHTATWFHYLATLRWFLFRCDVIFVLFFTAAAFIAVGTNQDKPGEIGIIV
ALAMLILGTFQWAVITSITVDSLMRSVDRVFKFIDLPSEEVSAGRGGKTGSDLVIDNPHA
QDYWPNRGQMDVKGLTVKYTEAGRAILSDVSFSVDGGHSVGLLGRTGSGKSTLLSALLRL
ASTDGEISVDGISWNSVSLHTWRKAFGVVPQKVFILTGTFRMNLDPHGRYSDDELWRVAD
EVGLKSVIEQFPDKLDFQLEDGGNVLSNGHKQLMCLARSILSKARILLLDEPSSYLDPIT
LQVLRKTLKQSFSDCTVILSEHRLEPLLECQSFLMMSGSSIKTYENLHKLLNETSQLKQA
MSPSDRLRLGPTLHRLNSTKRAAPPCANIASLPEEAEDDALDTRL
NT seq
4278 nt
NT seq
+upstream
nt +downstream
nt
atggaaaccctcagctcatcgccagtcgtcatggaggcctcaaagactgtgcagcctcag
ctcctgggccgcatcatcgcctccttcgaccccttccacgcgccggagcgcagccagggc
tacttcctggcgcttggcctctgcctgctcttcactgcacgtttcctgcttctgcagccg
gccatctttggcctgcatcacctgggcatgcagattcgcatcgccctcttcagcctcatc
tacaagaagacactgaagttgtctagtcgggtcttggataaaattagcacaagtcagctt
gtgagtctgatgtcggcccacctcaacaagttggacgagagccttggcctggcgcacttt
gtgtggatcacgcccctgcagtgcatcctgtgcgtgggtttgatctgggaactgatcgag
gtgaacggcttctgcgctctggcagctctcacgctgctcggcatcgtccaggcctgcctc
gcgcagaagatgggacctcaccgggtgaagcgagcggggatgaccaaccgtcgtctggcg
ctcacttcggagatcgtggagaacatccactcagtgaaggcgtacggctgggaggaggtg
atggagaccatcatcaagaatatccgacaatgaaccattttactgacaaggaagatcggc
tcgctgcgctacttctacagtgccgcctacttcttctccgccatcctggtgatcgtgtcc
gccatcgtgccgcacgcactgggcaaaggcatcatcctgcgccgcatcttcaccacggcg
tcctactgcatggtgctgcgcatgacgctcactcgccagctgcccggctccatccagatg
tggtacgacacgctggcgctggtcaacaagctcgaggatttcttgatgaaggaggagtac
cgcgttctggagtacaacctgaccaccactgagctcgagctcatcaatgtctctgcttcc
tgggacgagggcatcgtcgagctcttcgagaagatcaagcaggagagcaaagcgagcggc
catgccaacggcggcctcttcttcaccaacctctatgtgacgccggttctgaagaacatc
agcctgtacctggagaagggaaagatgttggccgtagctggatcgacaggctccggaaag
agttcactcctcatgttgatcctgggagaactcatgccatccgagggtaaaatccggcac
agcggccgcgtgtccttctcctcgcagacctcgtggatcatgccgggcaccatccgcgac
aacatcctgtttggcctcacctacgacgagtaccgatacacctccgtcatcaaagcctgc
cagctggaggaggactttgccttgttgcctgacaaggacaagacgctgctcggcgaagga
ggcgtgacgctcagcggcggtcagagggcccgtctgggcttggccagggcggtgtacaaa
gatgcagacctgtacctgctggacgcgcctttcacacacttggatattgtgactgagaaa
gagatttttgagaagtgcgtctgcaatctgatgtcctccaagactcgcatcgtggtgacc
agcaagctggagcacttgaagcgcgccgaccagatcttgctcctgcacaacggcgactgc
tacttctacggcagcttttcggagctccaagctcagcggcccgacttcagctcgctgctg
ctgggcatggaggcgtacgacaacgtcaacgccgagcgccgcggctccatcctcaccgag
accctacgcagggtctccgtggacgagagcgccggcttccgaggccccgagcccaggcgg
cattctttccgccacccgccgccccctccgatcatcaccgggccccaaggcggttgcgac
ggctacccagaaaagcgcaagcagtcgctcatcctcaaccctctggctgccgcccgcaag
ttctccttcatcggtcagcagaacgccaccggggcgccgcccgcatccatggaagacacc
gtgcgggagctctccgaaaggaagttctccatggtgcctgaagacgaccaggtcgaggag
gttctccctcgggggaacttgtaccaccatggcctgccccacctgagcgggcagcgccgg
cagtccgtgctggcgttcatcaccgccacgcaaggccacgagcggcacgagcagatgcag
acgtccttccggaagaaggtctcgatcgcgccgtcccactgcgacctgccgtccgacatg
gacatctattcccgacgcctgtccaaggacagcgtctacgacataagcgaggaggtggac
gaagaagacatggagcaatgctttgcggacgagcgcgagaacgcctttgagacaacgtcg
tggagcacctacctgcgctacgtcaccaccaacaggagcttagtctacgtcctcattttc
atcttcttggtctttgttattgaggttgcgggttcggtcatcggcatctatctcattacc
gacacaatctggagggacggcgccaacccgtcctctcccaactacatcgacgagcagcac
cccaacacctcgtcgccacccacccacctggccgtcatcgtgacgcccaccagcgcctac
tacatcatctacatctacgtggccacttcggagagcgtgctggcgctgggcttcttccga
gggctgccgctggtgcacacgctgctcaccgtctccaagaggctccacgatcagatgctc
agctccgtgctgcgcgctcccatggcgctgctcaacaccatgaagacaggccgcatcatg
aacagattcaccaaggacatggccaccatcgacgatatgctgcctctggtgctcttcgat
ctcattcagctgtcagtgatcgtcttgggcgccatcttcaccgtctccatcatacgtccg
tacatcttcatcgccgccatcccactggctgtcgtctttgtcatcctcaggaagtacttc
ctcaggacggggcagcaactcaagctgctggaggctgaagctcgcagtacaatcttctcg
cacgtcatcatctcgctgaagggcctgtggaccatccgggcgttcggccgtcagacgtac
ttcgagatgctcttccacaaggcgctcaacacccacacggccacctggttccactacctg
gccacgctacgctggttcctattccgctgcgatgtcatctttgtgctcttcttcaccgcc
gctgccttcatcgccgtgggcaccaaccaggataagccgggtgagatcggcatcatcgtg
gcgctggccatgctcatcctgggaacgttccagtgggccgtcatcaccagcatcaccgtg
gacagcctgatgcgctcggtcgatcgagtgttcaagttcatcgacctgccgtcggaggaa
gtttcggcgggccggggaggcaagacgggaagcgacctggtcatcgacaacccgcacgct
caggactattggcccaaccgaggacaaatggacgtgaagggcctcaccgtcaagtacacg
gaggccggacgggcgatcctcagcgacgtcagcttctcggtggacggcggacacagcgtg
ggtctgctcggtcgtaccggctcaggaaaaagcaccttgctgtcggctcttctgcgtctg
gcatccaccgacggcgaaatctccgttgacggcatctcctggaactccgtgtcacttcac
acctggaggaaggcctttggcgttgtgccgcagaaagttttcatcctaaccggaactttt
cggatgaacttggatcctcacggccgctacagtgacgacgagctatggcgggtggccgat
gaggtgggcctgaaatcggtgatcgagcagttccccgacaagttggacttccagctggag
gacggcggcaacgtgctgagcaacggacacaagcagctgatgtgtctggctcgctccatc
cttagcaaggcgcgcatcctgctgctggacgaaccctcgtcgtacctcgaccccataacg
ctgcaggtgcttcgcaagacgctgaagcagtcgttctccgactgcaccgtcattctctcc
gagcaccgactcgaacctctgctcgagtgtcagtccttcctgatgatgtcgggcagctcg
atcaagacgtacgagaacctccacaagctgctgaacgagacgagccagctgaagcaagcc
atgagcccttcggaccgcctgcgcctgggccccacgctgcaccggctcaactccaccaag
agggcggcgccgccttgcgccaacatcgcctcgctgcccgaggaagccgaggatgacgcg
ctcgacacacgactctag
DBGET
integrated database retrieval system
