Haliotis cracherodii (black abalone): 139442120
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Entry
139442120 CDS
T10814
Name
(RefSeq) symplekin-like isoform X1
KO
K06100
symplekin
Organism
hcra Haliotis cracherodii (black abalone)
Pathway
hcra03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hcra00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
139442120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hcra03021
]
139442120
03019 Messenger RNA biogenesis [BR:
hcra03019
]
139442120
Transcription machinery [BR:
hcra03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
139442120
Messenger RNA biogenesis [BR:
hcra03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
139442120
U7-dependent histone pre-mRNA processing factors
139442120
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Motif
Other DBs
NCBI-GeneID:
139442120
NCBI-ProteinID:
XP_071079022
LinkDB
All DBs
Position
Unknown
AA seq
1429 aa
AA seq
DB search
MSGEGRRSTAAQFFIEEDAEAEQSTSTYERVVELLNQASLAQRDAQKISNLRQVQELIVH
KDPTLLDNFLDEILAFQSDRAVDVKRFVIGFMEEASKKDPEVLSKVLPSLNMLLADENVN
VQKKVILTSIQMFKYTIQWLSKAKTPTPEKTASWEQMHTLKTRLFEMLDSENDGIRTHVV
KFLETVVLVLSKRSADSDAQKQKEGDVSLDMVPDGRHYLKLKKLEDQGLKTFEMMLHFLG
SPHISSINLMTVMGALTNVARQRPLFFDQVVQAFEALHVNLPPTLAKSQVASVRKNLKMH
MMSLLKHPASVDYVTQITTLLTDLGASQSEVSKFLPKVDESRKRKNEEPSTSSKKAKVEE
DAADEEDDDIGMTPWSSRNESNRPTGASRQTAIDITADDLCPRLSPQNVADLVLLSMVML
PDTAPAQFQATYTPIAAAGTETQIRHIARLLATQLTMAGMGKGLGELQRSAMEAEITGDG
DTSPASPMSFEPTSPKQLIQTLVGGTVSITEFKKPEPIAAPVVQPRKGVIRQFKLSSVTH
PLDSEKLDYMTLATVKRVFNTEKIAVQAHVPAARTKILACLTAAFGGELKDVMQTFIFED
LRNRADLAFAWLFQEYANCQGFSVSAPLGERPTLHSYDECLTRLLTGLLEAQDQKDGLFG
RLMMEAPLITDNATHILKRYCQDPARLDIGMAVLKDLILMRPSQRLRFLDVLLDLTSHYE
ADVRNMAIETTKELYNKPSMQSPVEKYALVHLKKLLLPRPPPSDSNQTIRVLRSTLSVDI
IEHWTEDVIKSHLYLYLGLLPSNHRLIHELANVYTATSADIKRTILRVLEIPVKGMGMQS
PELLTMVENCPKGAETLVMRVIHILTDKTLPSSELVERIRDLYQKRVPDVRFLIPVLTGL
TKVEVISALPKLIKLNPMVVKEVFHRLMGGYGDSTASYTSPLTPAELLVALHNIDPAKCD
MKTIIKAANLCFSEKMIYTQEVLAIVMQQLMEQTPLPTLLMRTVLQSLSMYPRLIGFVMN
ILQRLIIKQVWKQKKVWEGFVKCCQRTKPQSYQVLLQLPASQLKNAFEICPDIREPLLCH
VKAFTSQQQAHIPKGIMTVLETDPLEEQRKAEAARVEAEKKAKQKEEEETFVKLEAERIA
RERAEKEKSEKEKADREMREKEKLEKEKLEKEKQKAERDKLEREKKEKEKLEVEKKQQLE
RERKEKEEQEKAIKKEKQDEEEKQRREKEKEEVRKKKEREEKLAVEKAEKDRLEQERTEK
ERLKKEKERQDKMEKERRDKMEKEREEKERREKEEKERQEKEKEEEKCVEEVTVKEELKE
ELTEEGMKVLDEVGEDDEPQVEPKSEVSEEGGASTETEAMETAESSLGEGSLDLGEQGGG
SQEEAMDTQEEEEQAPAEKKVGRSRRGRGGKAAPKTSPVTRRSSRTKKS
NT seq
4290 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggcgaaggtcgtagatcaaccgcggcacagttctttattgaggaggatgcagaa
gcagagcaatccacatcgacgtatgaacgggtggtcgagctcctcaatcaggcttcctta
gctcagagagatgcccagaagatcagcaacctcagacaggtccaagagttgatcgtccat
aaggatccaacacttctagataatttcttagacgaaattttggctttccaaagtgaccga
gcagtggatgtgaagagattcgtgattggcttcatggaagaagcaagcaagaaagatcca
gaagttctctctaaggttctccccagtctgaacatgctgttggctgacgagaatgtcaat
gtacagaagaaggtcatcctgacctccatccagatgttcaagtatacaatacagtggctg
agcaaggccaagacgccgaccccagagaagacggcctcatgggaacagatgcacacactc
aaaactcgcctctttgaaatgcttgactcggaaaatgatggtatccgaacccatgttgtg
aagtttctggagacggtcgtcctggttctgtccaagagatccgcggactcggacgcccag
aagcagaaggaaggtgacgtttccttagacatggtgccagatggtcgccattacctcaaa
ctgaagaaactggaagaccagggcttgaaaacatttgagatgatgcttcacttccttggc
tcccctcacatctccagtattaacctgatgactgtgatgggggcgttgacaaacgtggct
cgacagaggccactgttcttcgaccaggttgtgcaggcctttgaagccctccatgtgaac
ctgccaccaacgctggcaaagtctcaggtagccagtgtgaggaagaacctgaagatgcac
atgatgagcctactgaagcaccccgcctccgtggactatgtgacccagatcacaacactg
ctcactgaccttggggctagccaatcagaggtgagcaagtttctgcccaaagttgatgaa
agtcggaagaggaagaatgaggagccgtcaacttcaagcaagaaggctaaggtggaggag
gatgctgcagatgaagaagatgatgacattggaatgacgccatggtcaagtcgtaacgag
tccaaccgaccaaccggcgccagtcgtcagactgccatcgatataacagctgatgatctc
tgtcctcgtctatctccccagaatgtggctgatctggtcctcctgagtatggtgatgctg
ccagacacggcccctgcccagttccaggccacgtacacccccatcgctgctgccggcacc
gagacacagattaggcatatagcccgtctcctggcaacacagctgaccatggccggcatg
ggcaaaggacttggagaactccagagatcggccatggaggcagagataacaggtgacgga
gacacttctcctgcctctcccatgagctttgaaccaacctcaccaaaacaactcatccaa
acactagtcgggggcacagtgagcatcactgagttcaagaagccggaaccaatcgctgcc
ccggtggtccagcccaggaagggggtgatccggcagttcaagctgtcctccgtgacgcac
cccttggactcggagaagctggactacatgacgctggccacggtcaagagggtcttcaac
acggagaagattgctgtgcaagcccacgtgccagcagctcgcaccaagatccttgcctgt
ctgactgcagcctttgggggagagcttaaagacgtgatgcagacattcatctttgaagac
ctgcggaaccgtgccgacttggcgtttgcgtggttgttccaggagtacgccaactgccag
ggttttagcgtgtcggcgccgctgggggagcggcccacgctgcacagctatgatgagtgt
ctcacccggctgctcaccggactcctggaggcccaggaccagaaggacgggttgtttggt
cgtctcatgatggaagccccgttgatcacagacaacgccactcacatcctcaagcgatac
tgtcaggacccggctcggcttgacatagggatggcagtgttaaaggatctgattctgatg
aggccatcccagagactgcggttcctggacgtccttctagatctgacatcccactatgag
gcggatgtgcgtaacatggcaattgagacaaccaaagagttatataataaacccagcatg
cagtcaccagttgagaaatatgctctagttcacttgaagaagttgttgctgccacggcct
ccaccgtcagactccaaccaaaccatccgtgtccttcgctccacactctcagtggacatc
atagagcactggaccgaggatgtgatcaagtctcacctgtacctctacctggggctcctc
ccgtccaaccacagactcatacacgagttggccaacgtgtacaccgccacctccgctgac
atcaagcggaccatcctgagagtactggagatacctgtgaaggggatggggatgcagtcg
ccggagctgctgacgatggtggagaactgccccaagggagcagagacgctggtgatgaga
gtcatccacatcctcacagacaaaactttgccgtcttcggagctggtggagagaattcgc
gacctgtaccagaaacgcgtcccggacgtccggttcctcatcccggtcctcaccggactc
accaaggttgaggtcatcagtgctctgcccaaactaatcaagctgaatccaatggttgtg
aaagaagtcttccaccgactaatggggggatacggcgacagcacggccagctacacatcc
cccctcacaccagctgagttgctggtagccctccacaacatcgaccccgccaagtgtgac
atgaagaccatcatcaaagcggccaacctgtgcttcagtgagaagatgatctacacacag
gaagtgttggctatagtcatgcagcagctgatggagcagacgccgctgccaacgttgctg
atgaggacggtgctgcagtcactgtcaatgtacccacgactcattggcttcgtcatgaac
atcctacagagactcatcatcaaacaggtgtggaagcagaagaaggtatgggaggggttt
gtcaagtgctgccagcgcaccaagccccagtcctaccaggttctcctgcagctcccagcc
tcccagctgaagaacgccttcgagatctgccccgacatccgcgagccacttctgtgtcat
gttaaagcattcacttcacaacagcaagcccacatcccgaagggcatcatgacggtgctg
gagacagacccactggaggagcagcggaaagccgaagcagcgcgtgttgaggccgagaag
aaggccaagcagaaagaggaagaggaaacatttgtcaagttagaagctgagcgaatagct
cgggagagggcggagaaagaaaaaagcgaaaaggagaaagcagatagggaaatgagggaa
aaggagaaattggaaaaagagaaattggaaaaagagaaacagaaggcagagagagacaaa
ctggagagagagaagaaagaaaaggagaaattagaagtggagaagaaacaacagttggag
agagaacggaaggagaaggaagagcaggagaaggctataaagaaggagaagcaagatgaa
gaagaaaagcagaggcgagagaaagaaaaggaagaagtaaggaaaaagaaagaaagggaa
gaaaagctggcagtggaaaaagcagaaaaagacagattagaacaagaaagaactgaaaag
gagaggttgaagaaagagaaagagagacaagataaaatggagaaggagaggcgagataaa
atggaaaaagagagagaggaaaaggaaagacgagagaaagaagaaaaggagagacaagag
aaggagaaagaagaagagaagtgtgtggaggaagtgacggtgaaagaggagctgaaagag
gagctgactgaagaagggatgaaggtgctggatgaagttggagaagatgacgagccacaa
gtggagcccaagtccgaggtgtccgaggagggcggggccagcacagagacggaggccatg
gagacagcggagagctccctaggggaggggtcgctagacctgggggagcagggtggtggc
agtcaggaggaggcgatggacacccaggaggaggaggaacaggcaccagcagagaagaaa
gtgggtcgaagtcgtagaggtcgcggcgggaaggctgcaccgaaaacctcaccagtcaca
aggagaagctctcgcaccaagaaatcatga
DBGET
integrated database retrieval system
