Haliotis cracherodii (black abalone): 139442131
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Entry
139442131 CDS
T10814
Name
(RefSeq) 5'-3' exoribonuclease 2-like
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
hcra Haliotis cracherodii (black abalone)
Pathway
hcra03008
Ribosome biogenesis in eukaryotes
hcra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hcra00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
139442131
09123 Folding, sorting and degradation
03018 RNA degradation
139442131
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hcra03021
]
139442131
03019 Messenger RNA biogenesis [BR:
hcra03019
]
139442131
03009 Ribosome biogenesis [BR:
hcra03009
]
139442131
03016 Transfer RNA biogenesis [BR:
hcra03016
]
139442131
Transcription machinery [BR:
hcra03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
139442131
Messenger RNA biogenesis [BR:
hcra03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
139442131
Ribosome biogenesis [BR:
hcra03009
]
Eukaryotic type
Pre-60S particles
RNases
139442131
Transfer RNA biogenesis [BR:
hcra03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
139442131
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC_4
Motif
Other DBs
NCBI-GeneID:
139442131
NCBI-ProteinID:
XP_071079034
LinkDB
All DBs
Position
Unknown
AA seq
996 aa
AA seq
DB search
MGVPAFFRWLSRKYASIVVHCVEEKPKEVNGVMVPVDSSKPNPNDVEFDNLYLDMNGIIH
PCCHPEDKPAPKNEDEMMVLIFEYIDRIFSIVRPRKVLYMAIDGVAPRAKMNQQRSRRFR
ASKEAIEKTEIMAQLREEIFAKGCSLPPEKPAQEKFDSNCITPGTPFMFKLADCLRYYIH
DRLNHDPGWSGIKVILSDANVPGEGEHKIMDYIRRQRAMPAHDPNTHHCLCGADADLIML
GLATHEPYFTIIREEFKPNKPKPCELCGQMGHEMKECAGLPKEKSGEHDQIEPFIGAEQE
FIFLRLNILREYLERELQMDGLPFEYDFERALDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLIKLYKITVYKTGGYLTDSGVVSLERVQLVMADLGQVEDEIFKKRRETELDFRRRNKE
KKMRMKQQRQGDRPRWMAGGQFAPKPVGDGASPVSNPRHEAYQMRMQQSASYSTSSGGSA
NQNAAENGGESRGTKRGASAVEEDEEEEEPNDDVKLWEDGWKDRYYKSKFDTDANDIDFR
HKVAHHYVRGLCWVLRYYYQGCASWKWYFPYHYAPFASDFVNIGDLPNDFERNTAPFQPL
EQLMSVFPAASKQHLPLTWQTLMEEPESPIIDFYPTDFKIDLNGKKYAWQGVALLPFVDE
KRLKEALKSVYPDLSEAERKRNVRGDDRLFVGFNHPSYSLFEGLYEGGGTSEPVDLDAGL
SEGVSGKIWCDEYAVLTGDVVRSILPALKDVEDNRAIGVHFKDPKFDEDHLFPAKILPGA
NIPDKVLKPEDFVKMFRSQQERGRGRGRGGYRGGGRGGLGYRPQLGFTPNSGYRQDKDIS
SALRMIRHESQGYGGGQNFVMSSQNMHHSQYHGGRNYGGGSQYGGYGSYGSSGSGGGGRS
GGGGGGGQGQGQGWQRNMDRYGGGQGSRQMGGYSSGYGGGAQGYGGGHGSSSGGRDGQTR
GYGDQRSQQSGQDRYRPYNQQQQYPQGSGSGNYRRY
NT seq
2991 nt
NT seq
+upstream
nt +downstream
nt
atgggtgttccagcattttttagatggctaagtcgcaaatatgcctcaattgtggtgcat
tgtgtggaagaaaagccgaaggaggtgaatggggtcatggtgcctgttgacagcagcaag
cctaaccccaatgacgtggagtttgacaacctctacttggacatgaacggcattatccat
ccatgctgccatcctgaagacaaacctgctcccaagaatgaggatgagatgatggtcctg
atctttgagtacattgatcgcattttctccatcgtacgtcccaggaaagtcctctacatg
gctatagatggtgtggcccctcgagcaaagatgaatcaacagagatccaggcgattccga
gcttcaaaggaagcgatagagaagacggagatcatggctcaactaagggaagagatcttt
gcaaagggctgtagtctccctccagagaaacctgctcaagaaaagtttgacagcaattgt
atcactccgggaacaccgtttatgttcaaactggccgactgtctgcggtactacattcac
gatcggctcaaccacgaccctggctggtcgggcatcaaggtcatcttgtccgatgccaat
gtgcctggagaaggagaacacaagatcatggactacattagaagacagagagccatgcct
gcccatgaccccaacacccatcactgtctctgcggggctgacgctgatctcattatgctg
ggcctggcaacccatgagccatactttaccatcatcagagaggagttcaaacccaacaag
cccaagccgtgcgaactgtgtggacaaatgggtcatgaaatgaaggagtgtgctggcttg
ccaaaggaaaaatctggagagcatgatcagatcgagcccttcattggtgcagagcaggag
tttatatttctgcgcttgaacatccttcgggagtacctggagcgagagctgcagatggat
gggctaccgtttgagtatgactttgagagagcgttggatgattgggtgttcatgtgcttc
tttgtgggcaatgactttctacctcatctaccatccttggaaatcagagagggagctata
gacagactgataaagctgtacaagatcaccgtctacaagactgggggctacttgacggac
agtggagtggtgtccttggagagagtacaacttgtcatggcagatctgggtcaagtggaa
gatgagattttcaagaagagacgagaaacagagcttgatttccggagacgtaacaaggag
aagaaaatgaggatgaaacagcaacgacaaggagaccgaccgcgatggatggcaggggga
cagtttgcacctaagcctgttggcgatggtgcatctcctgtgtccaacccacgacatgag
gcctaccagatgagaatgcagcagtcagcatcgtactccacatctagtggaggctcagcc
aatcagaatgccgcggagaatggtggggaaagtcggggaacgaagcgaggagcatctgca
gtggaggaggatgaagaagaggaggagcctaatgatgacgtcaaactatgggaagatggc
tggaaagataggtattacaaatccaagtttgacaccgatgcaaatgacattgacttccga
cataaagtggctcaccactatgtgagaggactgtgttgggtgttgaggtactactatcag
ggctgtgcttcctggaaatggtacttcccctaccactatgcaccatttgcttcggacttt
gtcaacatcggggaccttcccaacgactttgagaggaacactgcacctttccagcccctg
gagcagctgatgagtgtgttccccgccgccagcaagcagcatctccccctcacctggcag
actctcatggaggaaccggaatcacccatcattgatttctaccccacagacttcaagata
gatttgaatggcaagaaatatgcttggcagggtgtcgctctgttgccgtttgtggatgag
aagaggctaaaggaggccttgaagagtgtgtatcccgacctctcagaggctgaacggaag
agaaatgtccgcggcgatgatcgcttgtttgtgggcttcaaccatccctcctactccctg
tttgaggggctctacgagggtggaggaaccagtgagcctgtagatttggatgccggtctg
tctgaaggagtctcagggaaaatctggtgtgatgagtatgcagtgctaactggagatgtt
gtgcgatctattctgcctgcactgaaggatgtcgaggataacagagccattggtgttcac
ttcaaggatcccaagtttgatgaagatcatctcttccctgccaagatcctgcctggcgcc
aacattcctgataaggtcttgaagccagaggactttgtgaagatgttccgcagccagcag
gagcgagggcgtggccggggacgcggcgggtaccgtggcggagggcggggtgggttgggc
tataggccgcagcttggcttcacccccaacagtggctacagacaggataaagacatttcg
tcagccctcaggatgatcagacatgagagccagggctacggaggtggtcagaactttgtc
atgtcgtcccagaacatgcatcactctcagtatcatggcggccgcaactacggaggtggc
agtcagtatggaggctacggcagctacggcagcagcggtagtggaggtggtggacgaagt
ggagggggaggaggaggaggccaaggccaaggccaagggtggcagaggaacatggatcgg
tatggagggggacaggggagccgtcagatgggcggctacagcagtggctacggcgggggc
gcccagggttatggtggaggccacggtagcagctctggtggtcgtgatggtcagacaagg
ggatacggtgatcagaggtcccagcagtcaggacaagaccggtatcgaccgtacaaccaa
cagcaacaatacccacaaggcagtggtagcggtaactacaggcggtattga
DBGET
integrated database retrieval system
