Haliotis cracherodii (black abalone): 139444585
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Entry
139444585 CDS
T10814
Name
(RefSeq) collagen alpha-2(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
hcra Haliotis cracherodii (black abalone)
Pathway
hcra04382
Cornified envelope formation
hcra04512
ECM-receptor interaction
hcra04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hcra00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
139444585
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
139444585
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
139444585
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hcra04147
]
139444585
00536 Glycosaminoglycan binding proteins [BR:
hcra00536
]
139444585
Exosome [BR:
hcra04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
139444585
Glycosaminoglycan binding proteins [BR:
hcra00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
139444585
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
139444585
NCBI-ProteinID:
XP_071081588
LinkDB
All DBs
Position
Unknown
AA seq
1672 aa
AA seq
DB search
MGLLTSLLMLSPLARPSVDASQFEPNPYSAEPETWQRGDPGSPGLPGLPGEAGTPGLDGL
PGIKGEPSPVGVTLPGQKGEPGADGLPGLPGSHGRDGPIGPKGEPGLSGPPGPFGERGQP
GEKGNMGLGTHGEKGQKGSLGPPGNPGPPGGLEALTNPPGQIQGPKGLKGMLGDEGMKGE
PGLPGMKGPSGLQGLPGPPGMFGEKGVPGIAGPRGKQGYPGVPGQPGQKGDRGMDGLPGL
PGLPGMKGDRGLGGVDGLRGQRGPPGPAGGPGGDGPPGPVGPAGQRGLPGDPGLPGLPGP
QGLRGNDGPSGGPGIPGVPGTQGLDGPKGDRGDSGVPGITGLDGRPGAPGLPGQKGEPGF
PGESGGSIPGVRGPSGLPGLDGIPGGKGERGAKGLPGPPGNSTKGLPGPSGPKGEKGQGG
FSGLPGRDGLPGLPGDKGDRGGSCSLCQNGLKGEKGLSGLDGLPGQPGIPGDSGPVGTKG
EPGEDGPPGLSGLPGLRGEDGLPGLPGIQGIKGNDARAEVIPGPEGFKGERGDVGLPGES
GRRGLPGPQGPPGASGLPGIKGERGMKGLPGLDGRPGNSGEPGIPGSRGQPGIGLPGFPG
DRGDPGVSGLPGLPGMEGQKGEPGRLPSNIRDTLKGEAGQPGLPGPSGIPGMPGLPGQKG
NPGLPGNSGVDGLPGFKGEGGLPGLPGLSGPRGLPGPRGDKGEPGLPGLPGPNGLKGDGG
LPGLPGISGLKGEPGFPGEAMVGPKGEPGLRGLPGEAGIVGYAGPEGLRGSPGLPGLKGE
PGQPGLPGLDGLPGVKGESGRDGQPGFPGNDGPEGLPGLPGEPGSKGDSGLPGLPGLSGP
KGESGLPGPAGQSGLPGLNGVRGQPGLPGQDGLPGLPGVKGDPGLMGFPGEPGREGLPGL
QGLAGIKGEPGAAGYPGEIGREGIRGPKGNGGLPGLPGLKGDAGEAALPGLPGDRGEDGL
PGLSGERGQDGLPGLSGEKGNPGEPGIGLPGRDGEPGVPGRDGEPGLPGLSGPKGNPGPV
GFPGLKGERGQPGLDGRSGQPGRDGLSGMKGNSGLPGLPGAPGNKGESGLPGLPGTSGLK
GDGGLDGRPGLPGLPGPKGERGFNGRDGEPGLPGLKGDVGDSGLPGLPGLSGAKGSPGLS
GLPGAPGEKGEPGFPGLDGLPGQSGQPGERGLDGPAGPPGLPGRSTQGLKGEPGRVGGPG
NDGRPGLKGDPGMPGLDGLPGVKGDPGQSTDGLPGLKGEPGLPGRSGLPGDRGQSGSDGL
PGLPGLKGDRGQSGFPGEQGRDGLPGLSGSKGNSGLPGLPGISGQKGESGLPGLPGLLGP
KGEAGLPGLSGLDGAPGQPGGFGLKGEPGLPGVVNYEQLPKGDRGYKGDPGLNGLPGLSG
PKGEPGRPGSPGIPGEPGPSGLPGFKGERGNSGLRGLDGLPGTAGTPGQRGPSGQPGDRG
LPGRSPPTGFLLVRHSQSQEVPSCPRGQAQMWDGYSLLYIEGNEKSHHQDLGWAGSCMPR
FSTMPFLFCNVDNVCNYASRNDRSYWLSTTAPIPMMPVAEGEIRPYISRCVVCDAPANVI
AVHSQTLQIPDCPNGWNGLWIGYSFAMHTAAGPGGGGQSLSSPGSCLEDFRATPFIECNG
ARGTCHYFANKYSFWLTTIELNEQFSSPRSQTLKAGNLRTRVSRCQVCIKNV
NT seq
5019 nt
NT seq
+upstream
nt +downstream
nt
atgggtctgttgaccagcctgttgatgttatctcccctggctaggccctcggtggatgca
agtcagtttgagcccaacccgtactcagcagagcccgaaacctggcagcgaggagatcct
ggctctcctggtctgcctggtcttcccggagaggctggtacacctggtctggacggtctt
cctggtattaagggagaaccatcacctgtcggagtcaccctcccaggacagaagggagag
cctggagcagatggcctacctgggttgcctggaagtcacggaagagatggacccattggc
cccaagggagaacctggcttgtcaggaccgcctggtccatttggagaacgaggacaacct
ggcgagaaaggtaacatgggtttgggcacacatggagagaagggacagaaaggctcgctt
ggaccccctggcaaccctggacccccaggtggtttagaagctctcaccaaccccccaggc
caaatccagggaccgaagggactgaagggcatgctaggagatgagggcatgaagggtgag
cctggtctgcctggcatgaagggaccctctggtcttcagggcctacctggtccaccagga
atgtttggcgagaagggtgtacctggcattgctggtcctcgtggtaaacaaggttatcct
ggtgttcccgggcaacctggacaaaagggtgatcgaggtatggatggtcttcctggtctg
cctggcctgcctggaatgaagggagatcgtggtctgggtggtgttgatggtcttcgtggt
cagagaggtccccctggtcctgcaggaggacctggaggagatggtccaccgggtccagtt
ggacctgctggtcaacgtggtctgcctggtgatccaggactgcctggcctccctggacca
caaggtttgcgtggtaatgatggtccttccggtggccctggaatccctggcgtgcctggt
acacaaggtcttgatggtcccaaaggagacaggggagactctggagttccaggtattact
ggtctggatggtcgccctggtgctcctggcctgcctggacagaagggagaacctggtttt
cctggtgaatctggaggaagtattcctggagtccggggaccatctggcttacctggtctg
gatggtattcctggtggcaagggagagagaggtgctaaaggtctgcctggcccacctgga
aattctaccaagggtttgcctggcccctccggtcccaagggagagaagggtcagggaggt
ttctctggtttgcctggtcgtgatggtcttcctggtcttcctggagataaaggtgatcgt
ggtggttcctgcagcctgtgtcagaatggtcttaagggagagaagggtctgtctggtcta
gatggtctgcctggtcaacctggtataccaggagattcaggaccagttggaaccaaagga
gagcccggagaggatggtcctccaggtctgtctggcctacctggtctcaggggtgaagat
ggtctacctggcctgcctggtattcaaggtataaagggaaatgatgcaagggcagaggtc
atccctggccctgagggattcaagggtgagcgtggtgatgttggtcttcctggtgagtct
ggtcgccgaggtctgcctggtcctcagggaccccctggggcttccggtctacctggaatc
aagggagagaggggaatgaaaggtcttcctggtttagatggtcgccctggcaactcggga
gagcctggtattcctggctcaagaggacagcctggaattggcctgcctggcttccctggt
gaccgtggtgacccaggagtgtctggtctgcctggtcttcctggtatggaaggacagaag
ggagaaccaggaagacttcccagcaacatcagggacacattgaagggcgaagctggacaa
ccaggtctgcctggtccgtcaggtattcctggcatgccaggattgccaggacagaaggga
aatccaggtttgcctggtaactctggtgtggatggcctacctggatttaagggagaaggt
ggtctgcctggtctgcctggattgtctggtccaagaggtctgcctggtccccgtggtgac
aaaggagagccaggattgccaggattgcctggaccaaatggtctgaagggagatggtggt
ctacctggtttgccaggcatttcaggtttgaagggagagcctggctttcctggagaagca
atggtaggacccaagggagaacctggtctgcgtggtctccctggagaagcaggaattgtt
ggctatgctggcccagagggtttgcgtggtagtcccggcttgcctggtctcaagggggaa
cccggccagcctggtttgcctggtcttgatggtcttcctggagtgaagggggagtctgga
cgggatggacaacctggcttccctggaaacgatggaccggagggtctgcctggacttcct
ggtgagcctggcagtaagggtgactctggtttgcctggcctccctggactctcggggcca
aagggtgagagtggtcttcccggacctgctggacaatccggccttcctggacttaatggc
gtcagaggacaacctggactacctggtcaagatggtttgcctggactgccaggtgtgaag
ggtgatcctggactgatgggtttccccggtgaacctggacgtgagggacttcctggtctt
cagggtttggctggaatcaagggagaacctggtgcagctggctaccctggagaaattggt
cgtgagggcattagaggacctaagggcaacggtggtctgcctggactgcctggtctgaag
ggagacgctggtgaggcagcactgcctggacttcctggtgaccggggtgaagatggtcta
cctggattatctggcgaacgtggacaggatggtctgcctggtctgtctggagaaaaggga
aaccctggtgagcctggtatcggcctgcctggcagagacggtgagcccggagtgcctggc
cgtgacggagaacctggactccctggcctgtcaggaccaaagggaaatcctggacctgta
ggcttccctggcctcaagggagagaggggacagcctggtcttgatggtcgctctggccag
cctggaagagatggtctgtctggaatgaaaggaaactctggtcttcccggcctgcctgga
gctcctggtaacaagggagagtctggtctgcctggcctgccaggaacttctggcctcaag
ggtgatgggggtcttgatgggcggcctggcctgcctggtttgcctggtcctaagggagag
aggggattcaatggacgggatggagagccaggtcttcctggacttaagggagatgtcggt
gactctggtctgcctggtctcccaggtttgtctggagctaaaggatcacctggtctgtct
ggtctgcccggagccccgggagagaagggtgagcccggattccccggtctggatggactt
cccggtcagtctggacaaccaggagagagaggtttggatggcccggctggccctcctggt
cttcctggacgctccacacagggtctgaagggagagcctggacgtgtgggaggacctggc
aatgatggacgcccaggactgaagggagatccaggtatgcctggactggatggtctgcct
ggtgtgaagggagatccaggacaatccaccgacggtcttcctggacttaagggagagcct
ggactacctggacgatctggtctgcctggagatcgtggtcagtctggaagtgatggtctg
cctggtttacctggcctcaagggcgaccgtggacaatctggattccccggagagcaagga
cgtgatggacttcctggtctttctggatccaagggtaactctggcttgcctggactccct
ggcatctctggtcagaagggagagagtggtcttcctggtcttcctggactcctgggacca
aagggagaggctggtctgcctggtctgtctggtctggatggagcacctggtcagcctggt
ggctttggtttgaagggagagcctggtttgcccggtgttgtgaattacgaacaacttcct
aaaggagatcgaggatacaagggagaccccggtcttaatggtctgccaggtctgtccgga
cccaagggagaaccaggacgccccggatctcctggtattcctggtgagcctggtccaagt
ggtctgcctggattcaagggagaacgtggtaactctggtctgcgaggtctggatggtctg
cccggtactgcaggaacaccaggtcagcgtggtccatctggccagcctggtgaccggggt
ctgcctggccgctccccacccaccggcttcctcctggtgcgccactcccagtcccaggaa
gtacccagctgcccacgtggtcaagcccagatgtgggatggttacagcttgctctacatt
gaaggaaatgagaagtcacaccaccaagacttaggatgggccggatcctgcatgcctcgt
ttcagcaccatgcctttcttgttctgcaacgtggataacgtttgcaactacgccagcaga
aatgacaggtcctactggctctcaacaactgcccctattcccatgatgcctgtagctgag
ggagaaatccgtccatatatcagtcgctgtgttgtgtgcgatgctcccgctaatgtgatc
gctgtccacagtcaaacgcttcagataccagattgtccaaatggatggaatggcctctgg
ataggttacagttttgccatgcacacagcagccggtcctggcggcggtggccagtctctc
tccagccctggcagttgccttgaagacttccgagccactccattcatcgaatgtaacggt
gctcgtggcacttgtcattactttgctaataaatacagcttctggctcactactatagaa
ttaaatgaacaatttagttcaccacgttcacaaacacttaaagcaggaaacctccggact
agagttagtaggtgtcaagtttgcatcaaaaatgtgtga
DBGET
integrated database retrieval system
