Haliotis cracherodii (black abalone): 139445789
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Entry
139445789 CDS
T10814
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hcra Haliotis cracherodii (black abalone)
Brite
KEGG Orthology (KO) [BR:
hcra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hcra03016
]
139445789
Enzymes [BR:
hcra01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
139445789
Transfer RNA biogenesis [BR:
hcra03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
139445789
Prokaryotic type
tRNA splicing ligases
139445789
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
139445789
NCBI-ProteinID:
XP_071083114
LinkDB
All DBs
Position
Unknown
AA seq
495 aa
AA seq
DB search
MRTYNDELKYLEKISANCWHIKKGFVENMKVDGYFYTNDRLEKLMFDELKHSCNSKGFGG
FLPGMKQIANVAALPGIVSKSIGLPDVHSGYGFAIGNMAAFDMNDPTAVVSPGGVGFDIN
CGVRLLRTNLHANDVIPLKEQLSQCLFDHIPVGVGSRGIIPMTAQNLEEALEMGMDWSLR
EGYAWAEDKEHCEEYGRMLNADPSKVSNRAKKRGLPQLGTLGAGNHYAEIQVVEEIYDDY
AAKKMGIEFKDQVCVMIHSGSRGMGHQVATDALVAMEKAMKRDKIDVNDRQLACAHIQSQ
EGQDYLRGMAAAANYAWVNRTSMTFLTRQAFAKMFKTTPDDLDMHMIYDVSHNIAKVEEH
FIDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTE
TFGTTCHGAGRALSRAKSRRNLDYSDVLAALDQKGISIRVASPKLVMEEAPESYKNVTDV
VDTCKFDLQLLTCQS
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgaggacatataatgacgagctcaagtacttggagaaaatctccgccaactgctggcac
atcaagaagggatttgttgaaaacatgaaagttgacggttatttctacacaaatgaccgc
ctggagaagctgatgtttgatgaattgaagcactcgtgtaacagtaaaggcttcggcggc
tttcttccggggatgaagcagatagctaatgttgctgctctacctggaattgtatcgaaa
tctattggacttccagatgttcattctgggtatggcttcgcaattggtaacatggcagcc
tttgacatgaatgaccctacagcagttgtctctcctggtggtgttggtttcgacatcaac
tgcggtgtgcgccttctgcgtacaaacctccacgctaatgatgtgatcccgttgaaggaa
cagctgtcccagtgcctgtttgatcatattccagtgggcgtcggctcacgggggatcata
cccatgacagctcaaaacttggaggaggctcttgagatggggatggactggtcgctgagg
gaaggctatgcgtgggcggaggacaaggaacactgtgaggagtatggcaggatgctcaat
gctgacccctctaaagtcagcaacagagccaagaagaggggcctaccacagctggggacc
ctaggtgccggaaaccactacgccgagatccaggtcgtggaggagatctatgacgactat
gcagccaagaagatggggattgagttcaaggaccaggtctgtgtgatgatccacagtggc
agccgtggcatgggacaccaggtggcgacagatgctcttgtggccatggagaaggcgatg
aagcgcgacaagatcgacgtgaatgaccgccagctagcatgtgctcacattcagtcccag
gagggtcaggactacctgcgtggcatggccgccgccgccaactacgcctgggtcaaccgc
accagcatgaccttcctcaccagacaggcatttgccaagatgttcaagacaacgccggat
gaccttgacatgcacatgatctatgatgtgtcgcacaacattgccaaagtagaggagcat
tttattgacggcaagcagaagacacttcttgttcacaggaagggatccacacgagccttc
ccgccccaccaccctctcattccggtggattatcagctgacgggccagcctgttctcata
ggtggcaccatgggcacctgcagctatgtgctgacgggcaccgaacagggcatgacggaa
accttcggcacgacgtgtcacggcgcagggagagcactctcccgagctaagtcgcggcgg
aacctggactattcggatgtgttggcagccctggatcagaaggggatcagcatcagggtt
gcatcccccaagcttgtgatggaagaggctccagaatcttacaagaatgtgactgatgtg
gtagacacatgtaagtttgatctacagttattaacttgtcagtcttaa
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