Haliotis cracherodii (black abalone): 139447491
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Entry
139447491 CDS
T10814
Name
(RefSeq) collagen alpha-2(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
hcra Haliotis cracherodii (black abalone)
Pathway
hcra04382
Cornified envelope formation
hcra04512
ECM-receptor interaction
hcra04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hcra00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
139447491
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
139447491
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
139447491
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hcra04147
]
139447491
00536 Glycosaminoglycan binding proteins [BR:
hcra00536
]
139447491
Exosome [BR:
hcra04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
139447491
Glycosaminoglycan binding proteins [BR:
hcra00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
139447491
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
139447491
NCBI-ProteinID:
XP_071084992
LinkDB
All DBs
Position
Unknown
AA seq
1802 aa
AA seq
DB search
MILCCSGASPLAGTANLFHTSRVPSSSRRNKAMSTWLLLFISVIALGTLSQGVSAQRARG
DVDPKRCGAGCETGGNCRCIGEKGSRGAPGAIGPSGPQGNQGFPGPEGLPGPKGMKGDIG
PNGPLGEKGARGKMGSPGFSGINGIPGFPGPPGPRGASGLDGCNGTQGDPGSPGLPGLPG
EAGTPGLDGLPGIKGEPSPVGVTLPGQKGEPGADGLPGLPGSHGRDGPIGPKGEPGLSGP
PGPFGERGQPGEKGNMGLGTHGEKGQKGSLGPPGNPGPPGGLEALTNPPGQIQGPKGLKG
MLGDEGMKGEPGLPGMKGPSGLQGLPGPPGMFGEKGVPGIAGPRGKQGYPGVPGQPGQKG
DRGMDGLPGLPGLPGMKGDRGLGGVDGLRGQRGPPGPAGGPGGDGPPGPVGPAGQRGLPG
DPGLPGLPGPQGLRGNDGPSGGPGIPGVPGTQGLDGPKGDRGDSGVPGITGLDGRPGAPG
LPGQKGEPGFPGESGGSIPGVRGPSGLPGLDGIPGGKGERGAKGLPGPPGNSTKGLPGPS
GPKGEKGQGGFSGLPGRDGLPGLPGDKGDRGGSCSLCQNGLKGEKGLSGLDGLPGQPGIP
GDSGPVGTKGEPGEDGPPGLSGLPGLRGEDGLPGLPGIQGIKGNDARAEVIPGPEGFKGE
RGDVGLPGESGRRGLPGPQGPPGASGLPGIKGERGMKGLPGLDGRPGNSGEPGIPGSRGQ
PGIGLPGFPGDRGDPGVSGLPGLPGMEGQKGEPGRLPSNIRDTLKGEAGQPGLPGPSGIP
GMPGLPGQKGNPGLPGNSGVDGLPGFKGEGGLPGLPGLSGPRGLPGPRGDKGEPGLPGLP
GPNGLKGDGGLPGLPGISGLKGEPGFPGEAMVGPKGEPGLRGLPGEAGIVGYAGPEGLRG
SPGLPGLKGEPGQPGLPGLDGLPGVKGESGRDGQPGFPGNDGPEGLPGLPGEPGSKGDSG
LPGLPGLSGPKGESGLPGPAGQSGLPGLNGVRGQPGQPGQDGLPGLPGVKGDPGLMGFPG
EPGREGLPGLQGLAGIKGEPGAAGYPGEIGREGIRGPKGNGGLPGLPGLKGDAGEAALPG
LPGDRGEDGLPGLSGERGQDGLPGLSGEKGNPGEPGIGLPGRDGEPGVPGRDGEPGLPGL
SGPKGNPGPVGFPGLKGERGQPGLDGRSGQPGRDGLSGMKGNSGLPGLPGAPGNKGESGL
PGLPGTSGLKGDGGLDGRPGLPGLPGPKGERGFNGRDGEPGLPGLKGDVGDSGLPGLPGL
SGAKGSPGLSGLPGAPGEKGEPGFPGLDGLPGQSGQPGERGLDGPAGPPGLPGRSTQGLK
GEPGRVGGPGNDGRPGLKGDPGMPGLDGLPGVKGDPGQSTDGLPGLKGEPGLPGRSGLPG
DRGQSGSDGLPGLPGLKGDRGQSGFPGEQGRDGLPGLSGSKGNSGLPGLPGISGQKGESG
LPGLPGLLGPKGEAGLPGLSGLDGAPGQPGGFGLKGEPGLPGVVNYEQLPKGDRGYKGDP
GLNGLPGLSGPKGEPGRPGSPGIPGEPGPSGLPGFKGERGNSGLRGLDGLPGTAGTPGQR
GPSGQPGDRGLPGRSPPTGFLLVRHSQSQEVPSCPRGQAQMWDGYSLLYIEGNEKSHHQD
LGWAGSCMPRFSTMPFLFCNVDNVCNYASRNDRSYWLSTTAPIPMMPVAEGEIRPYISRC
VVCDAPANVIAVHSQTLQIPDCPNGWNGLWIGYSFAMHTAAGPGGGGQSLSSPGSCLEDF
RATPFIECNGARGTCHYFANKYSFWLTTIELNEQFSSPRSQTLKAGNLRTRVSRCQVCIK
NV
NT seq
5409 nt
NT seq
+upstream
nt +downstream
nt
atgattttgtgttgctcaggtgccagtcccttggctggcactgccaacctctttcacacc
agtagagtaccgagttcgtcccgtagaaataaggccatgtctacatggctgcttctcttc
atctctgtcatcgctttagggaccctttctcaaggcgttagcgcacaaagagcaagaggt
gatgtcgatcccaaacgatgtggagctggctgcgaaactggaggaaactgcagatgtata
ggagaaaaaggctccaggggtgcaccgggagccattggaccatctggtccccagggtaac
caaggcttccctggacccgaaggccttcctggacccaagggaatgaaaggcgacattggc
cccaacggcccacttggagaaaagggagcccggggaaagatggggtcacctggtttctct
ggcatcaacggtattcctggttttcctggcccacccggacctcgtggtgcttctggtcta
gatggttgcaatggaactcagggagatcctggctctcctggtctgcctggtcttcccgga
gaggctggtacacctggtctggacggtcttcctggtattaagggagaaccatcacctgtc
ggagtcaccctcccaggacagaagggagagcctggagcagatggcctacctgggttgcct
ggaagtcacggaagagatggacccattggccccaagggagaacctggcttgtcaggaccg
cctggtccatttggagaacgaggacaacctggcgagaaaggtaacatgggtttgggcaca
catggagagaagggacagaaaggctcgcttggaccccctggcaaccctggacccccaggt
ggtttagaagctctcaccaaccccccaggccaaatccagggaccgaagggactgaagggc
atgctaggagatgagggcatgaagggtgagcctggtctgcctggcatgaagggaccctct
ggtcttcagggcctacctggtccaccaggaatgtttggcgagaagggtgtacctggcatt
gctggtcctcgtggtaaacaaggttatcctggtgttcccgggcaacctggacaaaagggt
gatcgaggtatggatggtcttcctggtctgcctggcctgcctggaatgaagggagatcgt
ggtctgggtggtgttgatggtcttcgtggtcagagaggtccccctggtcctgcaggagga
cctggaggagatggtccaccgggtccagttggacctgctggtcaacgtggtctgcctggt
gatccaggactgcctggcctccctggaccacaaggtttgcgtggtaatgatggtccttcc
ggtggccctggaatccctggcgtgcctggtacacaaggtcttgatggtcccaaaggagac
aggggagactctggagttccaggtattactggtctggatggtcgccctggtgctcctggc
ctgcctggacagaagggagaacctggttttcctggtgaatctggaggaagtattcctgga
gtccggggaccatctggcttacctggtctggatggtattcctggtggcaagggagagaga
ggtgctaaaggtctgcctggcccacctggaaattctaccaagggtttgcctggcccctcc
ggtcccaagggagagaagggtcagggaggtttctctggtttgcctggtcgtgatggtctt
cctggtcttcctggagataaaggtgatcgtggtggttcctgcagcctgtgtcagaatggt
cttaagggagagaagggtctgtctggtctagatggtctgcctggtcaacctggtatacca
ggagattcaggaccagttggaaccaaaggagagcccggagaggatggtcctccaggtctg
tctggcctacctggtctcaggggtgaagatggtctacctggcctgcctggtattcaaggt
ataaagggaaatgatgcaagggcagaggtcatccctggccctgagggtttcaagggtgag
cgtggtgatgttggtcttcctggtgagtctggtcgccgaggtctgcctggtcctcaggga
ccccctggggcttccggtctacctggaatcaagggagagaggggaatgaaaggtcttcct
ggtttagatggtcgccctggcaactcgggagagcctggtattcctggctcaagaggacag
cctggaattggcctgcctggcttccctggtgaccgtggtgacccaggagtgtctggtctg
cctggtcttcctggtatggaaggacagaagggagaaccaggaagacttcccagcaacatc
agggacacattgaagggcgaagctggacaaccaggtctgcctggtccgtcaggtattcct
ggcatgccaggattgccaggacagaagggaaatccaggtttgcctggtaactctggtgtg
gatggcctacctggatttaagggagaaggtggtctgcctggtctgcctggattgtctggt
ccaagaggtctgcctggtccccgtggtgacaaaggagagccaggattgccaggattgcct
ggaccaaatggtctgaagggagatggtggtctacctggtttgccaggcatttcaggtttg
aagggagagcctggctttcctggagaagcaatggtaggacccaagggagaacctggtctg
cgtggtctccctggagaagcaggaattgttggctatgctggcccagagggtttgcgtggt
agtcccggcttgcctggtctcaagggggaacccggccagcctggtttgcctggtcttgat
ggtcttcctggagtgaagggggagtctggacgggatggacaacctggcttccctggaaac
gatggaccggagggtctgcctggacttcctggtgagcctggcagtaagggggactctggt
ttgcctggcctccctggactctcggggccaaagggtgagagtggtcttcccggacctgct
ggacaatccggccttcctggacttaatggcgtcagaggacaacctggacaacctggtcaa
gatggtttgcctggactgccaggtgtgaagggtgatccaggactgatgggtttccccggt
gaacctggacgtgagggacttcctggtcttcagggtttggctggaatcaagggagaacct
ggtgcagctggctaccctggagaaattggtcgtgagggcattagaggacctaagggcaac
ggtggtctgcctggactgcctggtctgaagggagacgctggtgaggcagcactgcctgga
cttcctggtgaccggggtgaagatggtctacctggattatctggcgaacgtggacaggat
ggtctgcctggtctgtctggagaaaagggaaaccctggtgagcctggtatcggcctgcct
ggcagagacggtgagcccggagtgcctggccgtgacggagaacctggactccctggcctg
tcaggaccaaagggaaatcctggacctgtaggcttccctggcctcaagggagagagggga
cagcctggtcttgatggtcgctctggccagcctggaagagatggtctgtctggaatgaaa
ggaaactctggtcttcccggcctgcctggagctcctggtaacaagggagagtctggtctg
cctggcctgccaggaacttctggcctcaagggtgatgggggtcttgatgggcggcctggc
ctgcctggtttgcctggtcctaagggagagaggggattcaatggacgggatggagagcca
ggtcttcctggacttaagggagatgtcggtgactctggtctgcctggtctcccaggtttg
tctggagctaaaggatcacctggtctgtctggtctgcccggagccccgggagagaagggt
gagcccggattccccggtctggatggacttcccggtcagtctggacaaccaggagagaga
ggtttggatggcccggctggccctcctggtcttcctggacgctccacacagggtctgaag
ggagagcctggacgtgtgggaggacctggtaatgatggacgcccaggactgaagggagat
ccaggtatgcctggactggatggtctgcctggtgtgaagggagatccaggacaatccacc
gacggtcttcctggacttaagggagagcctggactacctggacgatctggtctgcctgga
gatcgtggtcagtctggaagtgatggtctgcctggtttacctggcctcaagggcgaccgt
ggacaatctggattccccggagagcaaggacgtgatggacttcctggtctttctggatcc
aagggtaactctggcttgcctggactccctggcatctctggtcagaagggagagagtggt
cttcctggtcttcctggactcctgggaccaaagggagaggctggtctgcctggtctgtct
ggtctggatggagcacctggtcagcctggtggctttggtttgaagggagagcctggtttg
cccggtgttgtgaattacgaacaacttcctaaaggagatcgaggatacaagggagaccct
ggtcttaatggtctgccaggtctgtccggacccaagggagaaccaggacgccccggatct
cctggtattcctggtgagcctggtccaagtggtctgcctggattcaagggagaacgtggt
aactctggtctgcgaggtctggatggtctgcccggtactgcaggaacaccaggtcagcgt
ggtccatctggccagcctggtgaccggggtctgcctggccgctccccacccaccggcttc
ctcctggtgcgccactctcagtcccaggaagtacccagctgcccacgtggtcaagcccag
atgtgggatggttacagcttgctctacattgaaggaaatgagaagtcacaccaccaagac
ttaggatgggctggatcctgcatgcctcgtttcagcaccatgcctttcttgttctgcaac
gtggataacgtttgcaactacgccagcagaaatgacaggtcctactggctctcaacaact
gcccctattcccatgatgcctgtagctgagggagaaatccgtccatatatcagtcgctgt
gttgtgtgcgatgctcccgctaatgtgatcgctgtccacagtcaaacgcttcagatacca
gattgtccaaatggatggaatggcctctggataggttacagttttgccatgcacacagca
gccggtcctggcggcggtggccagtctctctccagccctggcagttgccttgaagacttc
cgagccactccattcatcgaatgtaacggtgctcgtggcacttgtcattactttgctaat
aaatacagcttctggctcactactatagaattaaatgaacaatttagttcaccacgttca
caaacacttaaagcaggaaacctccggactagagttagtaggtgtcaagtttgcatcaaa
aatgtgtga
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integrated database retrieval system
