Haliotis cracherodii (black abalone): 139448530
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Entry
139448530 CDS
T10814
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
hcra Haliotis cracherodii (black abalone)
Pathway
hcra03020
RNA polymerase
hcra03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hcra00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
139448530
09124 Replication and repair
03420 Nucleotide excision repair
139448530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hcra03021
]
139448530
03400 DNA repair and recombination proteins [BR:
hcra03400
]
139448530
Enzymes [BR:
hcra01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
139448530
Transcription machinery [BR:
hcra03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
139448530
DNA repair and recombination proteins [BR:
hcra03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
139448530
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
139448530
NCBI-ProteinID:
XP_071086186
LinkDB
All DBs
Position
Unknown
AA seq
1943 aa
AA seq
DB search
MAYVGDSNAPVMLVKKVQFGILGPDEIKRMSVTEGGIRYSETQEGGRPKIGGLMDPRQGV
IDRMSRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTIKVLRCVCFFCSKMLVDSTGP
KIKDILNKSKGHPRKRLAHVYDLCKSRKICEGGDEMDKRTEEEDPTGEKKGHGGCGRYQP
KLKRTGLEVVAEWKNVNEESQEKKLILSAERVLEIFKRISDEECMILGMDPRYARPDWMI
LTVYPVPPLAVRPAVVMFGSARNQDDLTHKLADIVKANNQLRRNEQNGAAAHIISEDTKM
LQYHCATLVDNELPGLPRAVQKSGRPLKSVKQRLKGKEGRVRGNLMGKRVDFSARTVITP
DPNLRVDQVGVPRTIAQNLTFPELVTPFNIDRMQELVRRGANQYPGAKYIIRDNGERIDL
RFHPKSSDLHLQVGYKVERHMQDDDVVIFNRQPTLHKMSMMCHRVKVLPWSTFRLNLSVT
TPYNADFDGDEMNLHLAQSLETRAEIHNLAAVPRMIITPQANRPVMGIVQDTLCAVRKMT
KRDVFLDRGDVMKLLMFMPTWDGRLPIPAILKPRPLWTGKQIFSIVIPGRVNVTRTHSTH
PDDEDKGPYKWISPGDTKVLIEDGELICGILCKKTLGATSGALLHIVFMELGFDTAGKLY
GNIQTCVNNWLLIEGHSIGIGDTIADPETYIEIQETIRKAKTEVIEVIEKAHNDELKPSP
GNTLRQTFENQVNRILNDARDKTGSKAQKSLSEYNNFKAMVVAGSKGSKINISQVIACVG
QQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLID
TAVKTAETGYIQRRLIKAMESVMVKYDGTIRNQVEQLVQLRYGEDGLDATHVEFQSMPSL
KPSNRAFEKKFKFEPTNERDLRKCLSEEVIKDVIGDPAVISELEREFEQLREDRNALRQI
FPTGDGKIVLPCNLMRMITNAQKIFRINTRKPADLHPIKVVEGVRELCRRLIVVAGEDRL
SVQANANATILMKILVRATLCAKRVANEFRLSAEAFEWIIGEIETKFLQAQAHAGEMVGA
LAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKKPKTPSLTVYLLDQAAR
DAEKAKDVLCRLEHTTLRKVTANTAIYYDPDPMNTVIVEDQEWVSVYYEMPDFDASRISA
WLLRIELDRKRMTDKKLTMEQISEKITAGFGDDLNCIFNDDNAEKLVLRVRIMNSDESKN
EEEEMADKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPTTDDKKRIFITDEGEYKA
AAEWILETDGTALMKVLSERDIDPIRTYTNDIVEVFATLGIEAVRKAIEKEMNHVISFDG
SYVNYRHLALLCDVMTAKGHLMAITRHGINRQETGALARCSFEETVDILMEAAAHGEHDP
MKGVSENIMLGQLAKIGTGCFDLLLDAEKCKYGMEIPTAGGSGMMSGAGTGMFFGSVGSP
VSGMSPQMTPWNQGATPAYASAWSPGIGSGMTPGQAGFSPSAASESGFSPGYSPAWSPQP
GSPGSPVSPYIPSPRGAMSPSYSPASPSYMPSSPAMTPQSPGYSPTSPSYSPSSPGYSPT
SPKYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPNFSPQS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPKYTPTSPSYS
PSSPSYSPSSPQYSPTSPKYSPTSPSYSPSSPKYSPSSPNYTPTSPQYSPQSPEYSPSSP
QYSPSSPQYSPSSPTYSPTSPKYTPTSPTYSPTSPRYSPTSPTYTPTSPKYSPTSPTYTP
TTPKYSPTSPRYSGQGEEESDED
NT seq
5832 nt
NT seq
+upstream
nt +downstream
nt
atggcgtacgtgggagactcgaatgccccagttatgctggtgaagaaggtccagttcgga
atattgggaccagatgagattaagcgaatgtctgtgaccgaggggggcatcagatactcc
gaaacccaggagggtggtcgacccaagatcggcggcctgatggacccacgacaaggagtt
atagaccgaatgtcccgatgtcagacctgtgcgggcaacatgacagaatgtcccggacac
tttgggcacattgagcttgccaaaccagtatttcatgttggatttcttgtgaaaacaatc
aaagtgttgcgatgtgtctgtttcttctgctccaagatgctggtggattccactggtccc
aaaataaaagacattctcaacaaatccaaaggccatcctcgcaagcgacttgctcacgtg
tatgacttgtgcaagagtcggaaaatttgtgaaggtggagatgaaatggacaaacgaact
gaagaggaggatccaacaggagagaagaagggccatggtgggtgtggcagatatcaaccc
aaactgaagagaactggtcttgaggtggttgcagaatggaaaaatgtgaatgaggagtcc
caagaaaagaaattgattctgtcagcagaaagagtgcttgaaatcttcaaaagaatttct
gatgaagagtgtatgattcttggaatggacccaaggtatgctcgtcctgattggatgatt
ctgacagtgtatcctgtgccgccattggctgtaagaccagctgttgtcatgtttggctcg
gcaaggaatcaggatgatttaactcacaagttggctgacatagtgaaggccaacaaccag
cttcgacgtaatgaacagaacggagctgccgctcacatcatatctgaagacacaaagatg
ttgcagtaccactgtgccacactggtagacaacgagctgcccggtttgcccagggcagta
caaaagtcaggccgtcccctgaagtcagtaaaacaaagattgaagggaaaggaaggtcga
gttcgaggaaacttgatgggaaagcgtgtggacttctctgcacgtactgtcattacgcca
gatcccaatctgagagtggaccaagtcggtgttcccagaaccattgcacagaacttaaca
ttcccagaacttgtcacaccattcaacatcgacagaatgcaggagctggtacgtcgtgga
gccaatcagtatcctggagccaagtacatcatccgagataatggagagaggatcgatctc
aggtttcatcctaagtcgtcagatctccatcttcaagttggctacaaggtggagagacac
atgcaagatgacgacgtggtcatcttcaaccgacagcccactctccacaagatgagtatg
atgtgtcacagggtcaaagtgttgccatggtccactttccgtctcaatctcagtgtaacc
actccctacaatgctgattttgatggtgatgagatgaaccttcacttagcgcagtcactc
gaaacccgggctgaaattcataacctggctgctgtccctcgtatgataatcaccccccag
gccaacaggcctgttatgggtattgtgcaggacacgctgtgtgctgtcaggaaaatgaca
aagagagatgtctttttagacagaggtgacgtgatgaaactgctgatgttcatgccgaca
tgggacggccggctgccgattccagccatcctcaaacccaggcccttatggacagggaag
caaatcttttccatcgtcatccctggtcgagtgaatgtgacgaggactcacagcacacat
ccagatgatgaagacaaagggccgtacaaatggatatctcccggagacacaaaggtcttg
atagaagatggtgagttgatctgtggaatcttgtgtaagaagactcttggtgccacatct
ggagctctcctgcatattgtcttcatggaacttggctttgacacagcaggaaaactgtat
ggtaacattcagacatgtgtcaacaactggctgcttattgaggggcacagcataggaatt
ggagacaccattgctgacccagagacatacatagaaattcaggagaccatccgtaaagcc
aaaacggaggtgatagaggtcattgaaaaagcccacaacgacgagttgaagccttcgcct
ggtaacacacttaggcagactttcgagaatcaggtcaacagaatcctgaacgatgctcgt
gacaagactggaagtaaggctcagaagtccctgtctgaatacaacaacttcaaggctatg
gtggtggctggatccaaaggatcgaaaatcaacatctctcaggttattgcctgtgtggga
cagcagaatgtggagggtaaacgtattccattcggtttcaaacatcggacactgccgcac
ttcatcaaggatgactacggtcccgagtctcgaggctttgttgagaactcctatcttgcc
ggtttgactccttctgagttcttcttccacgccatgggcggaagagagggtctcattgat
actgctgtaaaaactgcagaaactggttacatccagcgtcggttgatcaaggctatggag
agcgtgatggtcaagtatgatggcacaatacgtaaccaggtcgaacaactggtccagttg
agatatggagaggacggtctggacgccacacatgtcgagttccagagtatgccttcactc
aaaccatctaacagagctttcgagaagaagttcaagttcgaaccaacaaatgaaagggat
ctgaggaagtgtttgtcagaggaggtgatcaaggatgtgatcggtgacccagctgtcatt
tctgagctggaacgtgaatttgaacagttgagggaagacagaaacgccctgagacagatt
ttccccaccggggatggaaagattgtgttgccgtgcaacctgatgagaatgatcacaaat
gctcagaaaatcttccgaatcaacacaagaaaaccagcagatctacacccgatcaaagtt
gtagaaggtgtgcgagagctgtgccgtcgactgatcgtggtggctggagaggacagattg
agtgtccaggctaacgccaatgccaccattctcatgaagattttagtgagagccacactt
tgcgccaaacgtgttgccaacgagttcagactgtctgcagaagcatttgaatggatcatc
ggtgaaattgagacaaaattcttacaagctcaggcccatgcaggtgagatggtaggagcc
ctggccgcacagtctctgggagaacctgccacacagatgacactgaacactttccattat
gctggtgtgtctgccaaaaacgtaaccctgggtgtacctcgtctgaaggaaatcatcaac
atctccaagaagcccaagaccccctccctgactgtgtacctcctggaccaggcagcaagg
gatgcagagaaggccaaggatgtactgtgtcgacttgagcacaccacgttgcggaaggtg
acggctaacacagccatctactacgaccccgaccccatgaacactgtgattgtggaggac
caggaatgggtcagtgtgtattacgagatgcccgactttgatgcttccaggatttcagcc
tggctgctccgcatcgagttggacaggaagcgtatgacagacaagaaactcaccatggaa
cagatctcagagaaaatcactgcaggttttggagatgatctgaactgcatcttcaatgat
gataatgctgaaaaactggttctgagagtccgaatcatgaactccgatgaaagcaaaaat
gaggaagaggaaatggcagacaagatggaggatgatgtgttcctccggtgtatcgaagcc
aacctcttgtctgacatgaccctccagggcattgaagctattgccaaggtgtatatgcat
ttgccaaccactgatgacaagaagcgtatcttcatcactgatgaaggagagtacaaggct
gctgctgagtggattctggagactgacggtaccgccctgatgaaggtgttgagtgaacga
gacatcgaccccatcaggacatacactaatgacattgtggaggtgtttgctacgttggga
attgaggctgtacgaaaagccattgagaaagagatgaaccacgttatctcctttgatggt
tcctatgtcaactaccgtcacttggcacttctgtgtgatgtgatgacagccaagggtcac
ttgatggccatcacacgtcacggtattaacaggcaggagacgggtgcactggcaagatgc
tccttcgaggaaacggtggacatcttgatggaggcagcagcccacggggagcacgacccg
atgaaaggtgtgtctgagaacatcatgctgggacagctggccaagatcggcactggctgc
ttcgacctgctcctggatgcagagaaatgtaaatacggcatggagatcccaacagctggt
ggctcaggaatgatgtcaggtgcaggaactggtatgttcttcggcagtgtgggcagtcct
gtcagcggcatgtctccacagatgaccccctggaaccagggagccacacccgcctacgcc
agtgcctggtcccctggtattggcagcggcatgacccctggtcaggcaggtttctctccg
tcagctgccagcgagagtggcttcagtcccggctacagccctgcctggtcaccgcagccc
ggctccccaggctcgccagtcagtccctacattcccagtccgcggggcgccatgtcgccg
agctactcaccggcgtcgccatcctacatgccaagctcgccagccatgacccctcagagt
cctggctactcaccaacaagtccgtcatactcgccatcaagtcctggttattcaccaact
tccccgaaatacagtccgacttctccatcatattctccaacaagtccaagctacagtccg
acttctccatcctactctcctacaagcccctcctattctccaacaagccccagctacagt
cccacatcaccatcctactcccctaccagcccatcctacagtcccaccagcccatcttac
agcccaacttctccatcctacagtcccacatcaccctcctatagccctacaagcccctcc
tattctcctaccagcccctcctattcccccacaagcccatcctactctccaaccagtcca
agctacagcccaactagtccctcgtattctccaagctctcctaacttcagcccccagtca
ccttcctactctccgaccagcccatcctatagcccaacaagcccctcgtactcacccacg
agtccaagctacagcccaacctccccaagctactctcctactagtccttcctacagcccc
agcagtcccagctattcgccaagctcgcccaaatacactccaaccagtccatcttattcc
ccaagcagcccttcctactccccaagctctccacagtactctccaacatcccccaaatac
agcccaacgagcccctcctactccccaagcagccccaagtattccccctcgtcccccaac
tataccccaacctccccccagtacagcccccagtctccagagtacagcccctcctcccct
caatacagtccaagctcaccgcagtactctccctcttctcctacctactccccaactagt
ccgaaatacaccccaacctccccaacatactctcctaccagccccagatactccccaacc
tcacccacgtacactccaacaagccccaaatactctccaacatcccccacatacacccca
accacacccaagtactccccgactagcccacgttactcaggccaaggtgaggaagagagt
gatgaagactag
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integrated database retrieval system
