Haliotis cracherodii (black abalone): 139452154
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Entry
139452154 CDS
T10814
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
hcra Haliotis cracherodii (black abalone)
Pathway
hcra03020
RNA polymerase
hcra03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hcra00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
139452154
09124 Replication and repair
03420 Nucleotide excision repair
139452154
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hcra03021
]
139452154
03400 DNA repair and recombination proteins [BR:
hcra03400
]
139452154
Enzymes [BR:
hcra01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
139452154
Transcription machinery [BR:
hcra03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
139452154
DNA repair and recombination proteins [BR:
hcra03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
139452154
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
139452154
NCBI-ProteinID:
XP_071089600
LinkDB
All DBs
Position
Unknown
AA seq
1176 aa
AA seq
DB search
MYGQDEEMYDEGDEGDDLTPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIV
EDAPPIDLQAEAQHTSGTLETPPRYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLT
YSAPLYVDITKTVIKEGEESVETLHQKTYIGKIPIMLRSTYCLLNGLTDRDLTELNECPL
DPGGYFIINGSEKVLIAQEKMATNTVYVFQQKDSKYAFKTELRSCLEHSSRPTSTLWVNM
MARGGSGAKKSAIGQRIVSILPYIKQEIPIIIVFRALGFVSDRDILEHIIYDFDDPEMME
MVKPSLDEAFVIQEQNVALNFIGARGARPGVTKDKRIKYAREILQKEMLPHVGVSEFCET
KKAYFLGYMVHRLLMAALGRREVDDRDHYGNKRLDLAGPLLAFLFRGMFRNLMKEVRMYA
QKFIDRGKDFNMELAIKTRIITDGLKYSLATGNWGDQKKASQARAGVSQVLNRLTFASTL
SHLRRLNSPIGRDGKLARPRQLHNTLWGMICPAETPEGGAVGLVKNLALMAYISVGSQPS
PILEFLEEWSMENLEEVAPSAIQDATKIFVNGCWVGIHRDPDQLMATLRKLRREMDIIVS
EVSMIRDFHDREIRIYTDAGRICRPLLIVENQKLLLKQSHIKQLKQREYNNYSWQDLVAS
GVVEYIDPVEEETIMLAMTPDDLQEKDSAYCSTYTHCEIHPAMVLGVCASIIPFPDHNQS
PRNTYQSAMGKQAMGVYITNYHVRMDTLAHGLFYPQKPLVTTRSMEYLRFRELPAGINSI
VAIACYTGYNQEDSVILNQGAIDRGFFRSFFFRSYKDSESKKGLDQEEVFEKPTRDYVQG
MRPATYDKLDDDGIIAPGTRVSGDDVLIGKTITLPANDDELESTARRFSKRDASVFMRRT
ETGIVDQVMVTINNDGYKFCKIRVRTVKTPQIGDKFASRHGQKGTCGITYRQEDMPFTCE
GITPDIIINPHAIPSRMTIGHLTECLQGKVAANKGEIGDATPFNDAVNVQKVSDLLSQYG
YHQRGNEVMMNGHTGRKLNAQIFLGPTYYQRLKHMVDDKIHSRARGPLQILNRQPMEGRS
RDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYRCHVCNICGLICIANLRNQTFECRG
CKNKTHISQVRIPYACKLLFQELMSMSIAPRMMVIA
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgtatggtcaagacgaagaaatgtatgatgagggagacgaaggggacgacctcaccccg
gatctgtggcaggaagcctgctggatcgtcatcagttcctattttgatgagaagggtctg
gtacgtcagcagctcgactcctttgatgagttcatccagatgtctgtgcagagaattgta
gaagatgctcccccgatcgatctacaggcagaagcccagcatacatcgggaacattggag
acaccgcccaggtacctgctgaagtttgagcagatctacctgtccaagcccacccactgg
gagaaggatggcgctcctagtcctatgatgcccaacgaggcacgactccgcaatctcacc
tactctgctcccctgtacgtggacatcacgaagaccgtgatcaaggagggagaggagtcc
gtagagacgttgcatcagaagacctacatcggcaaaatccccatcatgctgaggtccacg
tactgcctgctcaacggactcacagatcgtgacttgacggagctgaacgagtgtccgctg
gaccccggtgggtacttcatcatcaatggatctgagaaggtgttgatagctcaggagaag
atggccaccaatacagtgtacgtgtttcagcagaaggactccaagtatgccttcaagaca
gagttgaggtcatgcctggagcactcgtcgcgtcccaccagtacactgtgggtcaacatg
atggccaggggcgggtcgggagccaagaagagtgccattggtcagagaattgtgtccatt
cttccgtacatcaagcaggagatccctatcatcattgtgttccgagccctcggcttcgtg
tccgacagagacatccttgaacacatcatctacgacttcgatgaccctgaaatgatggaa
atggtgaagccgtcgctggatgaggcttttgtcatccaggaacaaaacgtggctctcaac
ttcatcggagccagaggtgctcgacctggtgtcacgaaggacaagagaatcaagtacgcc
agagaaatcttgcagaaggaaatgttgcctcatgtgggcgtcagcgagttctgtgagacc
aagaaggcctacttccttgggtacatggtccatcgtttactgatggcagctctcgggagg
cgtgaggtagatgacagagatcactatggcaacaagaggctggacttagctggtcctctt
ctggcgttcttgttcagaggcatgttccgtaacctgatgaaagaggtacgaatgtatgcc
cagaagttcatagatcgaggcaaagatttcaacatggagctggccattaagacacgtatc
atcacagacggactcaagtactccctggccacaggcaactggggggatcagaagaaggcc
tcccaggccagagctggagtgtcccaggtgttgaacagactgacgtttgcctccacattg
tctcacctgcgacgtctcaactcccccatcggccgagacggtaaactggcccgacctcga
cagctgcacaacaccctctggggtatgatctgcccggccgagacacccgagggaggtgct
gtgggccttgtgaagaacctggcgctgatggcctacatctctgtggggtcccagccgtcc
cctatcctggagttcttggaggagtggagtatggagaacctggaagaggtggccccatct
gccatacaggatgcgactaagatctttgtgaatgggtgctgggtgggcatccatcgcgac
cctgaccagctgatggccacgctgaggaagctgagaagagagatggacatcattgtgtcc
gaggtatccatgattcgcgacttccatgaccgcgagatccgcatctacacagatgcagga
cgtatttgtcggccgctgctgatcgtggagaatcagaaattgttgctgaagcagagtcac
atcaaacagctgaagcagagggagtacaacaactacagttggcaggacctggtggccagc
ggtgtcgtggagtacatcgaccctgtggaagaggagacgatcatgttggccatgacccca
gacgacctccaggagaaggactcggcgtattgttccacgtacacccactgcgagatccac
cctgccatggtgctcggagtctgtgcctccatcatccccttccccgatcacaaccagtct
ccccgtaacacctaccaatccgctatgggcaagcaggccatgggcgtctacatcaccaac
taccacgtgaggatggacaccctggcccacggcctcttctacccccagaagcccctggtc
accacgcggtccatggagtatctccgcttccgagagctgcccgctggcatcaactcgatc
gtggccatcgcctgctacactgggtacaaccaggaagattccgtcatcttgaaccaggga
gccatcgacagaggattcttcagatcctttttcttccgttcctacaaggattcagaatct
aagaagggtctcgatcaggaagaagtgtttgagaagccgaccagagattatgtccaaggt
atgcggccagcaacgtacgacaaactggatgacgacggcatcatagcgccaggaaccaga
gtgtctggagatgatgtgctgatcgggaagacaatcacactcccagctaatgatgatgag
ttggagtccacggcccggagattctccaagagagatgctagtgtcttcatgaggagaact
gagacaggcattgtcgatcaggtcatggtcaccattaacaacgatggctacaagttctgc
aagatccgagtgaggactgtaaagacgccacagattggagacaagtttgctagtcgtcat
ggacagaagggtacctgcggtattacgtacaggcaggaggatatgcccttcacgtgtgag
gggatcacccccgacatcatcatcaacccccacgccatccccagtcgtatgaccattggt
cacttgacagaatgcctgcagggcaaggtggcggccaacaagggggagatcggcgacgcc
acacccttcaacgatgctgtcaatgtacaaaaggtgtctgatctactcagtcagtatggc
taccatcagagaggcaatgaagtcatgatgaacggccacacgggacgcaagctgaacgcc
cagatcttcttaggccccacctactaccaacgtctcaagcacatggtggacgacaagatc
cactcccgcgccaggggccccctacagatcctcaacagacagcccatggagggacgatct
cgtgatggaggtctgcgttttggggagatggagcgagattgtcagattgcccacggtgcc
gcccagttcctcagagagagactcttcgaagcttcagacccttaccggtgccatgtgtgc
aatatttgtggcctcatctgcatcgccaacctccgcaaccagacgtttgagtgcaggggt
tgcaagaacaagacacatatttcccaggtgcggattccgtatgcgtgcaagctgttgttc
caggaactgatgtcgatgagcatcgcgcctcgtatgatggtcattgcttag
DBGET
integrated database retrieval system
