Haliotis cracherodii (black abalone): 139457379
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Entry
139457379 CDS
T10814
Name
(RefSeq) collagen alpha-1(I) chain-like
KO
K06237
collagen type IV alpha
Organism
hcra Haliotis cracherodii (black abalone)
Pathway
hcra04382
Cornified envelope formation
hcra04512
ECM-receptor interaction
hcra04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hcra00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
139457379
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
139457379
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
139457379
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hcra04147
]
139457379
00536 Glycosaminoglycan binding proteins [BR:
hcra00536
]
139457379
Exosome [BR:
hcra04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
139457379
Glycosaminoglycan binding proteins [BR:
hcra00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
139457379
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
EGF_CA
cEGF
FXa_inhibition
hEGF
EGF
EGF_3
Motif
Other DBs
NCBI-GeneID:
139457379
NCBI-ProteinID:
XP_071094887
LinkDB
All DBs
Position
Unknown
AA seq
1512 aa
AA seq
DB search
MTCRLHLTTACVTVLAVAVVMVDTVEALSHTTSIGFSASTRGIQYYDEGGNALFINDAFP
LVSGRLLQVCFYIHKNFGSDYTGTFFVFKKSNSGYRLIFQQNVVFPKTQGRHCVNMTEPP
LVIKGQFLGWRYDKDVGPISYSIPDQESGTIVVNNVPAPLVVGQTYGSRSFIKTYFFKVE
AIVELGLVGSTGSPGTIGATGQVGPPGLTGSTGQKGDKGVSGAAGPAGTQGITGSPGQRG
DVGQPGASGPQGIQGPRGLTGSPGSVGKAGKDGVEGRTGTPGERGETGSPGSRGMRGDAG
QTGMAGVTGVSGAKGPSGEPGQDGVPGMPGSTGLMGYSGMTGTRGVPGSAGMTGRAGTPG
IQGDPGITGSPGPAGTPGTHGRSGTTGETGIQGKVGATGTQGSPGATGHTGIPGIIGPVG
FPGVSGGTGLQGDRGADGVTGQSGPRGQAGLGGPAGSSGSSGSTGPPGTAGETGLRGPQG
FVGATGWSGTAGVTGPVGATGTHGSPGGTGFPGVPGSQGESGVTGPDGATGPLGNTGQAG
TTGASGGDGMPGATGYTGTPGMTGYVGATGPGGVSGQSGVPGAVGVSGITGPTGPEGMTG
SDGQTGQQGPAGARGATGAYGQNGVDGMTGPAGITGSSGQPGTPGADGAPGVLGQTGVTG
NQGDVGPAGVTGQSGLAGVSGMTGMQGDPGAVGMSGGTGPQGDPGMTGLSGQTGLPGGTG
MAGLVGHTGITGLSGPAGQTGPIGNNGLPGITGMSGEMGKNGAPGVNGTDGATGTNGPVG
PIGASGATGASGEAGPQGPNGTAGPQGTTGVAGPVGVSGSPGSVGATGVPGTRGSEGAAG
ATGAHGVTGLSGSDGLAGRTGSDGVTGPAGAVGQTGAPGTDGLPGVTGEVGGTGPQGIRG
YRGFNGSDGSVGAPGVTGYSGPMGSDGMTGSTGQMGATGPGGPSGYTGNSGVTGAPGVMG
VTGPRGVDGMNGSTGMQGLPGETGAQGSIGISGLPGPWGMTGFKGDIGATGQQGIQGKTG
DVGATGQVGPEGATGLVGPPGVHGSSGVTGLQGAAGPAGVTGRSGAPGNTGVTGMAGDTG
VNGIPGVNGTSGKDGVPGIPGSTGGTGADGPPGVSGSTGIAGSTGPIGLTGMSGSPGSPG
TTGPAGVGGMTGRSGPQGDSGVPGVSGTTGPRGSAGDTGTTGVTGQAGPPGLSGQVGATG
VSGSAGPQGTTGQIGPWGATGAIGYTGSTGKEGPRGIQGDAGITGWSGPRGWDGVTGGTG
VEGPSGMTGVTGPQGKLYEYPDYCNTSSCQHLCVNIGGGYECRCREGYSLAADNSTCDDV
NECVVYGPCEQLCNNTVGSFVCSCRPGFNLSSNSKNCEDFNECEHNLCSLSGYKGTPICI
NTMGSFRCIGFTPISLDKGEEYSEGGPYGVAYLSDLQQDNDSSPSSLASTTYVLTILVGC
LLGAVVLIALALVLLAYRTRTSRPHQPNPPTVYRLHPDMCEPRRNPTQRRDVESGALREQ
SYVNQPHPGMTL
NT seq
4539 nt
NT seq
+upstream
nt +downstream
nt
atgacgtgtagactacacttgaccacggcgtgtgtgacggtgctggcagtcgcagttgtc
atggtagacactgtagaggccttgtcccacacgacgtcaatcggcttctccgcctccacg
cgtgggatacagtactatgatgaggggggcaacgcgctgttcatcaacgacgcgtttccc
ctggtgtctgggcggctactccaggtctgcttctacatccacaaaaacttcggcagcgac
tacacggggacattcttcgtcttcaagaagagcaatagtggatacagactcatcttccag
cagaatgttgtctttccgaagacgcagggcaggcattgcgtcaacatgaccgagcctcca
ttagtcatcaagggtcagttcctgggatggaggtacgacaaggacgttggcccaatctcc
tactctatcccggaccaggagagcggaacgattgttgtcaacaatgtccccgccccattg
gttgtagggcagacatacgggagtcggagcttcatcaagacctacttctttaaggtggag
gccattgtagagctcggtcttgtcggctctactgggtcccctgggactattggtgctacg
ggtcaggtcggaccccccgggctgacggggtcgactggacagaagggggacaaaggtgtc
agtggggcagcaggacctgcaggtacacagggcatcactggcagtcctgggcagagaggt
gacgtgggtcagccgggagcctctgggccccaggggatacaagggccgcggggcctgaca
ggttccccgggaagtgttggtaaagctgggaaggacggtgtcgagggacgcactggtacc
ccaggagaacgaggcgaaaccggaagtccagggtcccgtgggatgcgcggtgacgcgggg
caaacagggatggcaggagttacgggcgtgtcaggtgcaaaggggccgtctggcgagcct
ggccaggacggggtaccaggaatgccaggaagtacaggactaatgggatattctggtatg
acgggcaccaggggcgtgccaggatctgcaggaatgaccggacgcgcggggacaccagga
atccaaggagacccaggcatcacgggatctccaggccccgcggggaccccaggaacacat
ggaagatcggggactacaggggagactggtatccaggggaaagttggagccaccggcacg
caagggagccctggagccacaggccacacgggcatacccggaataataggtcctgtggga
ttccctggcgtgtctggagggacgggtcttcagggtgacaggggagctgatggagtaact
ggacagtctgggccgcggggtcaagctggtctagggggacctgcaggctcatctggttcg
tccggttctactggccccccgggtacggcaggggagacagggttgagaggtccacaagga
tttgttggggctactggctggtccgggactgcaggtgtaaccggacccgtgggtgcgaca
ggtacacatggttcccccgggggtacggggtttccaggggtgcctgggagccagggagag
tctggcgttaccggtcctgatggcgcgaccggtcccttgggaaacactgggcaggcagga
acaacgggggcctccgggggagacgggatgccgggagccacgggatataccggcacacca
ggaatgaccgggtatgtgggtgcaactggtccaggcggtgtatccggacagtctggtgtt
cctggggcagtgggggtctccgggataacaggccctacaggccctgagggtatgacgggc
tctgatggacagactggtcagcagggacctgcaggtgcccgtggggctactggggcttac
ggccagaacggggtcgatggcatgacgggcccagcaggcattacaggaagctcgggacaa
ccaggtaccccgggggctgacggggccccgggcgtgctgggacagactggcgtgactggc
aaccagggggatgttggtcctgcgggagttactggccagtcagggctggctggtgtgtcg
gggatgacagggatgcagggagatccaggagcagtagggatgtctggaggaacaggacct
caaggggaccctggtatgacaggactctccggacagacaggtttacctggaggaacagga
atggcaggacttgtaggacacaccggtatcacgggcttgtccggtccggcgggacaaacg
ggaccgattgggaacaacggtttgccgggcatcacgggaatgagtggagaaatgggcaag
aatggagcgccaggtgtcaatggcacggatggagcaactgggaccaacggcccagtcggt
cctatcggagcttctggagctactggtgcatctggtgaagctggaccccagggaccaaat
ggcacagctggtcctcaaggcacgacaggtgtagctggtcctgtcggtgtgtctggatca
cctgggagtgttggagccactggtgtgccaggtaccaggggatcagagggtgcggcaggt
gccacaggagctcacggtgtgacaggactgtccggcagtgatgggttagcaggaagaaca
gggtctgatggtgtgacagggcctgctggtgcagtcggtcaaacaggcgctccaggtact
gatggactgcctggcgtcacaggggaggttgggggtactgggccccaaggtattagagga
tataggggcttcaatggttcagatggctcggtcggtgcacctggtgtgactggatatagc
ggaccaatgggctctgatggcatgaccggttctacagggcagatgggcgctactggtcca
ggcggaccaagtggatatactggaaactccggagtgacaggagcgccaggtgtaatgggt
gtcactggccctcgtggcgtagatggaatgaatggatcaactggaatgcaagggctacca
ggcgaaactggtgcacaaggcagtatagggatttctggtttaccgggtccctggggaatg
actgggtttaaaggcgatattggagcaactggtcaacaagggatacaaggaaaaacaggc
gatgttggcgcaacgggacaagttggtccagagggagctacggggttggtaggcccacca
ggagttcatggatcatcgggagtaacaggtctacaaggtgctgcaggccctgctggtgtt
actggtagatctggagctcctggaaatacaggtgtaactggaatggcaggtgacacagga
gtaaatgggattcctggtgtgaatggcacttctggtaaggatggtgtaccaggaatacca
ggctcaactgggggcactggagctgatggtccacctggagtgtctggcagcacggggatc
gctggttctacgggtcctattggattgactggcatgtctggatcccccggatcaccaggt
acaactggtccagctggtgtcggtggaatgactgggagatctggacctcagggagactct
ggagttcctggagtatcaggaacgacaggacctcggggatctgcaggagacactggaact
actggggtaacaggacaagcaggaccaccaggtctatcgggacaagtcggagccacgggt
gtgtcggggtctgcaggtccccaaggtacgacaggacagataggaccttggggtgcgacg
ggtgcgattgggtacaccggcagcaccgggaaagagggaccgcgcgggatccagggggat
gcaggaatcacaggatggagtgggcccagaggctgggatggagtgactggcggtaccggc
gtagaaggcccttccggtatgacaggtgttactggaccacaaggcaaactctatgaatat
cctgactactgcaacacctcctcgtgtcagcatctctgtgtcaacatcggcggcggttat
gagtgtcgctgtcgcgaaggttacagcctggcggccgacaacagcacctgtgacgatgtg
aacgagtgcgtcgtgtacggaccatgcgagcagttatgtaataacactgtcggtagcttc
gtctgcagctgccggccaggcttcaatctgtcatcaaacagcaaaaactgtgaagatttc
aacgagtgtgaacacaacctgtgttcattatctggctacaaagggactcccatctgcatc
aacaccatggggtcattccgctgcattgggtttacaccaatttcccttgacaaaggcgaa
gaatattcggaaggtggaccatacggcgtggcctacctgagcgacttacagcaggataat
gattcctccccaagcagccttgccagcaccacctacgtgctcaccatcctcgtaggctgt
ctgctcggggccgtcgtcctcattgccctcgccctcgtcctcctggcctacaggaccagg
acgtcacgcccgcaccaacccaacccacccaccgtgtaccgactccacccagacatgtgt
gaaccgcggcggaaccccacccagaggagagatgtggaatccggtgccctgcgtgaacag
tcctacgtcaatcaaccgcatccaggcatgacattgtga
DBGET
integrated database retrieval system
