Haliotis cracherodii (black abalone): 139459089
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Entry
139459089 CDS
T10814
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
hcra Haliotis cracherodii (black abalone)
Pathway
hcra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hcra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139459089
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hcra03019
]
139459089
03041 Spliceosome [BR:
hcra03041
]
139459089
Messenger RNA biogenesis [BR:
hcra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
139459089
Spliceosome [BR:
hcra03041
]
Complex B
Other components
Prp19-related factors
139459089
Complex C
139459089
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_19
TPR_2
TPR_8
Mad3_BUB1_I
TPR_15
TPR_10
ARM_TT21_C
NRDE-2
ARM_TT21
VAD1-2
Motif
Other DBs
NCBI-GeneID:
139459089
NCBI-ProteinID:
XP_071096632
LinkDB
All DBs
Position
Unknown
AA seq
854 aa
AA seq
DB search
MPVAEDTSRNDIFFEDEDLPYEEDILRNPFSVKCWLRYLEHKKEAAREVVNMIYERALKE
LPGSYKLWYNYLKLRRTQVRGRCVTDPAYEDANSAFERALVFMHKMPRIWLDYCQFLIDQ
GKITRSRRTLDRALRALPITQHNRIWPLYLKFVRMYDLPETAVRAYRRHLKLQKENTEQY
IEYLKTIGWLDEAAIRLADVINDETFVSREGKSKHQLWNELCELIAKNPDKVSSLKIEPI
IRQGLKRYTDQIGVLWNSLANYYIRGRHFERARDIYEEAIQTVITVRDFTQVFDEYAKFE
KSMIAAKMEAMEEAGASDEDDLDLELRLARLESLMDRRPLLLNSVLLRQNPHNVHEWHKR
VTLFEGKPREIINTYTEAVQTVDPQLASGKPHTLWVEFAKFYENAKQIEDARVIFEKAVK
VPYKHVDDLASVYCEWSELEIRHENNEGALKLMQKATMPPPRKVAYHDETETVQSRVHKS
LKVWSLYADLEESFGTFKSCKAVYDRIIDLRIATPQIIMNYGMFLEENNYFEEAFKAYEK
GIALFKWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQCLEKCPEKFAKALYLLYARLE
EEHGLARHAMAVYERATNAVLPEEQYEMYNVYIKQAAEIYGVTHTRSIYEKAIEVLPNQE
AREMSLRFADLERKLGEIDRARAIYAHCSQICDPRVAPSFWATWKEFEIKHGNEDTVREM
LRIKRSVQAIYNTQVNFMSSQMLAAAGKGDAPAAAGGVVVEPNEMQKLEEKARQLAEEAV
RDQPQQPDKKLLFVRSSTTADDIGEMVKTVNPEEINIDSDFSSDDDEEVEEVEVQTQIIP
NKVFGGLVNEEEED
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atgccggtagccgaagatacatcaaggaatgacattttctttgaagatgaggacctgccg
tatgaggaagatattctgaggaacccgttctcggtgaaatgctggctccgctacttagag
cacaagaaggaggcggcccgggaggtggtcaacatgatctacgagcgagcactcaaggag
ctgccgggaagctataaactgtggtataactacttaaaactgcggcgaacccaagtacga
ggccggtgtgtcacagatccggcttatgaggatgccaacagtgccttcgaaagggctctc
gtgttcatgcacaagatgccccgaatctggttagactattgccagttcctcatcgaccag
gggaagataacccgatcccgccgtacgcttgaccgagcactccgcgccctgcccataact
caacacaacagaatatggcctctgtacctcaagtttgttcgcatgtatgatctgcctgag
acagccgtccgtgcctacagaagacatctcaagctccagaaggagaacacagagcagtac
attgagtacttgaagaccattggctggctggatgaagcagccattagactggctgacgtc
atcaatgatgaaacatttgtctcaagggagggcaaatcaaaacatcagttatggaatgag
ctgtgtgagctgatcgccaagaaccctgacaaggtgtcatcactgaagattgagccaatc
attcgccagggcttaaagcgctacacggaccagattggtgttttgtggaactctctggcc
aactattatatccgtggccgacacttcgagcgggcaagggacatctacgaggaagccatt
cagacagtgatcactgtacgtgacttcacacaggtgtttgacgagtacgccaagtttgag
aaatccatgattgccgccaagatggaagctatggaggaggctggtgcttctgatgaagat
gaccttgaccttgagttgcgtcttgcgaggctggagagtctgatggaccgtcgaccactt
cttctcaacagcgtccttctgcgacagaaccctcacaatgtccatgagtggcacaagcgg
gtgactctgtttgaagggaaaccaagagagatcatcaacacatacaccgaggcagttcag
acagtcgacccacagctggcgtccggcaagccacacactctctgggtggagttcgccaag
ttctacgagaatgccaagcaaatagaagatgctcgggtgatctttgagaaggctgtgaag
gtgccgtacaagcatgtggatgacctcgcctctgtgtactgcgagtggtcggagctggag
atccgacatgaaaataatgaaggagctctaaaactgatgcagaaggcgacaatgccgcct
cccaggaaggtagcctaccatgacgagacggagacagtgcagtcgagagtccacaagtct
ctgaaagtgtggtccctgtacgctgacctggaggaaagcttcgggacattcaagtcatgt
aaagctgtgtatgatcgcatcattgacctccggattgcgaccccgcagatcatcatgaac
tatggaatgttcctcgaggagaataactactttgaggaggctttcaaggcctacgagaag
ggaattgcattgttcaaatggccgaacgtgtatgacatctggaatacctacctcacaaag
ttcatcgacagatacggcggcaagaaactagagagagcaagggacctgttcgagcaatgt
ctagaaaaatgtcctgagaagtttgccaaagcactgtatctgctgtatgcacgactggag
gaggagcatggactggcacgtcatgcaatggcggtgtatgagagagccactaatgccgta
ctgccggaggaacaatatgaaatgtacaatgtgtacataaagcaggctgcggagatctat
ggcgtgacacacacacggtccatctatgagaaggccatcgaggtgctgcccaatcaagaa
gctagggagatgagtctgaggtttgcagacttggagaggaagttgggagagatcgaccga
gcgcgagctatctatgcccactgctcccagatctgtgatccaagggtagcaccatcattt
tgggcgacgtggaaggagtttgagatcaaacatggcaatgaggacaccgtgagagaaatg
ctgaggatcaaacgcagcgttcaggccatatacaacacacaggtgaacttcatgtcatct
cagatgctggctgcagcaggtaagggtgatgcaccggctgcagcaggtggagttgtcgtg
gagcccaacgagatgcagaagctggaggagaaggcacggcagctagcggaggaggcagtg
cgagaccagcctcagcagccggacaagaaactactgtttgtcaggagctcgaccacggca
gatgatattggcgagatggtgaagaccgtaaaccctgaggagatcaacattgactctgac
ttctccagcgatgatgatgaggaagtagaggaggttgaagtacagactcagatcatcccc
aacaaggtgtttgggggacttgtcaacgaggaggaggaggactaa
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