KEGG   Haliotis cracherodii (black abalone): 139459616
Entry
139459616         CDS       T10814                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein-like
  KO
K12857  Prp8 binding protein
Organism
hcra  Haliotis cracherodii (black abalone)
Pathway
hcra03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:hcra00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    139459616
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:hcra03041]
    139459616
Spliceosome [BR:hcra03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    139459616
 Complex C
   U5 SnRNP specific factors
    139459616
SSDB
Motif
Pfam: WD40 WD40_Prp19 Beta-prop_EML_2 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_TEP1_2nd WDR55 Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_EML Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st Beta-prop_EIPR1 WD40_MABP1-WDR62_1st Beta-prop_IFT122_1st NBCH_WD40 Beta-prop_TEP1_C WDR90_beta-prop_4th Beta-prop_SPT8 Beta-prop_SCAP eIF2A Beta-prop_DCAF4 WD40_RFWD3 ANAPC4_WD40 Beta-prop_RIG_2nd Beta-prop_IFT140_1st Ge1_WD40 Beta-prop_WDR19_1st Beta-prop_Vps41 WD_LRWD1 Beta-prop_IP5PC_F Cytochrom_D1 Beta-prop_VPS8 WDR54
Other DBs
NCBI-GeneID: 139459616
NCBI-ProteinID: XP_071097301
LinkDB
Position
Unknown
AA seq 349 aa
MDHKRKAMDGALVPVKRARGNEVVLADGDTNGALLQSQNGPPRTSSLDGPIMLLTGHEGE
IFTAKFSPDGQLIASSGFDRLIYFWTVYGECENFTVLKGHTGAVMDLEFSTDGGMLFTVS
TDKTGAVWDVDSGTRIRKLKGHQTFVNSCNPARRGPQLVCTGSDDGTVKLWDARKKGVIQ
TFQNTYQVTAVSFNDTAEQIFSGGIDNDIKVWDLRKNNVLYRMRGHSDTVTGIEVSPDGS
YLLSNAMDNTLRVWDIRPFAPQERCVKIFQGHQHTFEKNLLHCSWSADGSKVTAGSGDRF
VYVWDTTSRRILYKLPGHAGSVNEVDFHPHEPIVLSCSSDKKMYLGEIE
NT seq 1050 nt   +upstreamnt  +downstreamnt
atggaccacaagagaaaggcaatggatggagctttggtgcccgtcaaacgggcacgtgga
aatgaagtcgtcttagcagatggcgacacgaacggtgctttgctacagagtcagaatggt
ccacctcggacatctagtcttgatgggccaatcatgctgcttacaggccacgagggagaa
atatttactgccaaattctctccagatgggcagttaattgcttcatcagggtttgacagg
ctcatatatttttggacagtatatggggaatgtgagaacttcacagtattgaaaggacac
acaggagctgtgatggatttagaattttccacagatggaggaatgctgttcactgtatca
acggacaagacaggtgcagtgtgggatgttgattcaggaactcgtatacgcaagttgaaa
ggtcaccagacgtttgtaaactcttgtaatcctgcaagaaggggtccacagctggtgtgc
acagggagtgatgatggaacagtcaaattgtgggatgccagaaagaagggtgtgatacag
acgtttcagaacacataccaggtaacagccgtcagtttcaacgacacagctgaacaaatc
ttctctggggggattgacaatgacatcaaggtatgggatttaaggaagaacaatgtgcta
tatcgaatgcgaggccattccgacacagtgactgggattgaggtcagcccagatgggtcc
tatctcctctcgaacgccatggataatacattgagagtgtgggatatccgaccctttgca
ccccaggaacgatgcgtaaagatatttcaaggtcatcaacatacatttgagaagaatctg
ttgcactgttcatggtcggctgatggcagcaaggtgacggcaggttctggtgaccgcttc
gtctacgtgtgggacacaacatcgcgacggatcttatacaagcttcccggtcatgctggc
tcagtcaatgaagttgacttccatcctcacgaaccaatagtgctctcctgttcaagtgat
aagaagatgtacctcggagaaatagagtga

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