Haliotis cracherodii (black abalone): 139459810
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Entry
139459810 CDS
T10814
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16-like
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
hcra Haliotis cracherodii (black abalone)
Pathway
hcra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hcra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139459810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hcra03041
]
139459810
Enzymes [BR:
hcra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
139459810
Spliceosome [BR:
hcra03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
139459810
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
WHD_HA2
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
AAA_30
PWI
nSTAND3
Flavi_DEAD
T2SSE
TsaE
nSTAND_NTPase5
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
139459810
NCBI-ProteinID:
XP_071097598
LinkDB
All DBs
Position
Unknown
AA seq
1031 aa
AA seq
DB search
MASIETWVNDKLHDLLGISDKYIGQYFVGLAAKSESHDEFVDKLRDTGAVDVDEQVTQFA
KELFNRVPHKRKIERTLTTDQHRQKELEHKNKTYTLLSDDEEDAVPAATMPKRSSKEKKR
NIRKKQESSESSSESERNDADDLDADLDMDSESDPDEAERQLDLKERDEFAKRLKDKDKE
KTRTVTSKSDKKAYEEAKKRLQLETEDRKRIIPDLRKQSRRDYLKKRGHDKLEDLEAEII
DDEYLFDGKSLTRREQAELNYKKKVLKLAKDHRKAGDIEKVNRYYMPKDDVKPQDKYVED
VTERGPNYEQSRWEEDHLSTALLKFGAKDAKSKKKAPEYEVIMDDEIEFVQALQLPGSIK
DKDQMPQMSEGEKQKMTIEETKKSLPIFPFKQDLIDAIHTHQVLIIEGETGSGKTTQIPQ
YLNDAGFNENGMKVGCTQPRRVAAMSVASRVAQEMGYKLGNEVGYSIRFEDCTSERTILK
YMTDGMLLREFLSEPDLASYSVLIIDEAHERTLHTDVLFGLVKDIARFRPDLKLLISSAT
LDAQKFSEFFDDAPIFRIPGRRFPVHIFYTKAPEADYLDAVVVSVLQIHVTQAPGDILVF
LTGQEEIETAQEMLTERTRKLGSKIKELVILPIYSNLPSEMQAKIFEPTPPGGRKVILAT
NIAETSLTIDGIIYVIDPGFCKMKSYNARTGMESLVVSPISRASANQRAGRAGRVAAGKC
FRLYTAWAYKNELEDNTIPEIQRTNLGNVVLLLKSLGINDLINFDFMDAPPHETLVLALE
QLYALGALNHMGELTKLGRRMAEFPVDPMMSKMILASEKYKCSKEVITIAAMLSVNNAVF
YRPKDKIVHADTARVNFFVPGGDHLTLLNVYTQWEDTDYSTQWCYENFIQHRSMKRARDV
RDQLEGLLDRVEIEIVSNPGETVNIRKAVTAGYFYHTSRMDKGGQYKTVKHHQTVMIHPN
SSLFEELPRWLIYHELVFTSKEFMRQVIEIENGWLLEVAPHYYRAKDLESGANKKMPKKA
GKAKDDLNRVY
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
atggcttctatagaaacatgggttaatgacaagctccacgatcttctaggcatatctgac
aaatacatcggccagtatttcgttggacttgctgcgaagtctgaaagccatgacgagttc
gttgacaaacttcgcgacacgggagcagttgatgtcgatgagcaagtgacacagtttgca
aaagaattatttaatcgggtacctcataaaaggaaaatagagagaaccttgacaacagat
caacatcgtcaaaaggaattagaacacaagaacaagacgtatactctgttgtctgacgat
gaggaggacgctgtgcctgcagcaacaatgccaaagagaagttcaaaggagaaaaaaaga
aatattcgcaagaagcaagaatcgtctgagagcagtagcgagagtgaaaggaatgatgct
gatgaccttgatgcagatctggacatggactcggagtcagacccagacgaggctgagcgg
cagcttgacctaaaggagcgagatgagtttgccaagagactgaaggacaaagacaaggag
aaaacacgaactgttacgtctaaaagtgacaagaaggcatatgaagaagccaagaagcgc
ctgcagctggagacggaggacaggaagcgcatcatcccagatttgcggaaacagtcccgt
cgcgactacctcaagaagcgaggtcatgacaagctagaggacctggaagctgagatcatt
gatgatgaatatctgtttgatggcaagagtctcaccaggcgggaacaagctgaactcaac
tacaagaagaaggtgctgaaactggccaaggaccatcgcaaagctggggacatcgagaag
gtgaaccgctactacatgcccaaggacgatgtgaagccccaggacaagtatgtggaggac
gtgacggagcgcggacccaactatgaacagagtcgctgggaggaggaccatctgtccacg
gctctcctcaagttcggagccaaagatgcaaagtccaagaagaaggctccggagtatgag
gtcatcatggacgatgagatcgagtttgtgcaagctctccagttgccaggctccatcaag
gacaaggaccaaatgccccaaatgtcagagggggagaaacagaaaatgaccattgaggag
acgaagaagagcctgcccatctttcccttcaagcaggacctgatcgatgccattcacacc
caccaggtcctgatcatcgagggcgagacggggtcgggcaagaccacacagataccacag
tacctcaatgacgcgggttttaacgaaaatggcatgaaggtcggatgcacccaacctcgc
cgagtggcggccatgtcagtagcatccagagtggcacaagagatgggatacaaacttggg
aatgaggtgggctacagcatcaggtttgaggactgcacctcagagagaactatcctcaag
tacatgacagacggcatgctgctccgggagttcctgtcagaaccagatctggccagttac
agtgtgttgatcattgatgaggcccatgagcggacgcttcacacggatgtcctcttcggt
ttggtcaaggacatagcaaggtttcgccctgatctcaaacttctcatttcaagcgcgact
cttgatgcccagaagttctcagagttctttgatgatgctccaatattccggattcctgga
aggaggtttcctgtgcatatcttctacactaaggccccggaggcggactacctggacgcg
gtggtggtgtcggtgctgcagatacatgtcacccaggctcccggagacatcctcgtcttc
ctcacgggtcaggaggagatcgagacagcgcaggaaatgttgacagaaagaacaaggaag
ttggggtcaaagatcaaggagttggtgattcttccaatctactccaatctaccttctgag
atgcaggctaagatatttgaaccaacaccaccagggggcaggaaggttattctggcaaca
aatatcgcagagacgtccctgacaatagatggcatcatctatgtgattgatcctggtttc
tgtaaaatgaagagctacaacgcccgcacaggcatggagtcactggttgtcagtcctata
tcgagggcgtcggccaatcagcgggcgggtcgggcagggcgtgttgctgcagggaagtgt
ttccggttgtacacggcgtgggcgtacaagaacgaactggaggacaacaccatccccgag
atccagcgcaccaaccttggcaacgtcgtgctgttgttgaagagtctgggtatcaacgac
ctcatcaactttgatttcatggacgcgccgccccacgagacactggtgctagccctggag
caactgtatgctctcggggcactgaaccacatgggggagctcactaagctagggagacgc
atggccgagtttcccgtcgatcccatgatgtccaagatgatccttgcttccgaaaaatac
aagtgctcaaaggaagtgatcacaatagctgccatgttgtctgtgaacaatgctgtattc
taccgtcccaaagataagattgtccatgctgatacggctcgtgtgaatttctttgtccct
ggaggagaccatctgaccctgctgaatgtatacacccaatgggaggacaccgactactcc
acacagtggtgttatgagaacttcatacagcaccggtccatgaagcgagctcgcgatgtc
cgtgatcaacttgagggactcctggacagagtggaaatagagattgtttccaaccctgga
gagactgtcaatattagaaaggccgtgacagcaggctacttctaccacacatccaggatg
gacaagggcggacagtacaagacagtcaagcaccatcagacagtcatgatccacccaaac
agctcactgtttgaggagctgccacgatggctcatctaccacgaactggtgttcacctcg
aaagagttcatgagacaagtgattgagatagagaatggctggcttctggaagtggcgcca
cattactaccgtgccaaggacctggagtcaggtgccaataagaagatgccaaagaaagca
ggaaaagccaaggatgacttgaacagagtgtattaa
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