Haliotis cracherodii (black abalone): 139461984
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Entry
139461984 CDS
T10814
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-like
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
hcra Haliotis cracherodii (black abalone)
Pathway
hcra03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hcra00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
139461984
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hcra03021
]
139461984
03019 Messenger RNA biogenesis [BR:
hcra03019
]
139461984
Transcription machinery [BR:
hcra03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
139461984
Messenger RNA biogenesis [BR:
hcra03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
139461984
U7-dependent histone pre-mRNA processing factors
139461984
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
DUF7928
Motif
Other DBs
NCBI-GeneID:
139461984
NCBI-ProteinID:
XP_071099577
LinkDB
All DBs
Position
Unknown
AA seq
687 aa
AA seq
DB search
MASKRKSESQVPAEESEQLIIRPLGAGQEVGRSCHIMEFKGKTIMLDCGIHPGMNGYASL
PFLDMVDVEEIDLLLISHFHLDHCGALPYFLEKTGFKGRCFMTHASKAIYRWLLSDYVKV
SNIATEAQLYSEKDIENSMDKIETVNFHQETEVNGVKFWCYTAGHVLGASMFMIEIAGVK
VLYTGDYSRQEDRHLMAAEIPNVRPDIVIIESTYGTHIHEKREDRELRFTSLVHDIVNRG
GRCLVPVFALGRAQELLLILDEYWSQHPELHDIPIYYASSLAKKCMSVYQTYINAMNDKI
RRQITISNPFIFKHIINLKSMEQFEDIGPSVVLASPGMMQSGLSRELFESWCTDKRNGCI
IAGYCVEGTLAKHILSEPDEIVTMTGQKLPLKCSVDYISFSAHADYQQTSEFLRALKPPH
VVLVHGEANEMSRLKAALQREYEDSTDYKMEVHNPRNTVAVELHFRGEKLAKVVGSLAAE
KAKQGTKVSGILVKRNFNYHIVAPGDLPNYTDLAMSTVTQRLSIAYTGTLPLLRYYLSQL
AGDVEAIKVNDKQALKVFKTITVVFEPRMVVIEWIANPVTDMYADSVVTVILRAEKDPMP
QKNVPAVMVVDRSHFQECVIDMMKEMFGQDSTGKLIKNNNLTVTVDETVAVINLETQEVQ
CGDEALQHVIQNSVTRLYQAITPLKVG
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcaaaacgaaaatccgagagtcaagtaccggctgaagagagcgaacaactcatt
attagacctctaggagccggtcaagaggttgggcgatcatgtcacatcatggagttcaaa
ggaaaaactataatgctggactgtgggatccacccaggcatgaatggctatgcttcattg
ccgtttcttgacatggtggatgtggaagaaatagacctgctccttatcagtcatttccac
ttggaccattgtggagccttgccatacttcctggagaaaacagggttcaaaggtcggtgc
ttcatgacgcatgcctcaaaagccatataccgatggctgctgtcagattacgtgaaagtc
agcaacattgccacagaggcgcagctgtactccgaaaaagacattgaaaactccatggac
aagattgaaactgtcaacttccatcaggaaacagaagtgaatggcgtgaagttctggtgc
tacacagctggacatgtgttgggggcgtccatgtttatgattgagattgctggggtcaag
gtgctgtacactggagactattcacgacaggaagaccgacatttaatggcagctgagatc
ccaaatgtgcgaccagatattgtcatcatcgagtcgacctacggcacacacatccatgag
aagcgtgaggatagagagttgagatttaccagtcttgtccacgacattgtcaatcgagga
ggtcgctgtcttgtgcctgtctttgcccttggccgagctcaggaactgctgctcatttta
gatgaatactggagtcaacatcctgagcttcacgacatccccatctactacgcatcatcg
ctggccaagaagtgtatgagtgtgtaccagacatacatcaacgccatgaacgacaagatc
agacgtcagatcaccatcagcaaccccttcatcttcaaacacatcatcaacctcaagagc
atggagcagtttgaggacattggtccatcagtggtgctagccagtcctggcatgatgcag
agtgggttgtcaagggaactgtttgagagctggtgtaccgataagcggaatggctgtata
attgctggctactgtgtggaggggacgctagcaaagcacatcctgtctgagccggatgag
attgtgacaatgacagggcagaagctgccgctaaagtgctctgtagattatatctccttc
tccgcccacgcagactaccagcagaccagcgagttcctccgtgctctcaaacctcctcat
gttgtgctggtgcatggtgaagctaatgaaatgagtcgtctgaaggctgcactacagcgg
gagtatgaagacagcaccgactacaagatggaggtccacaaccctcgcaacaccgttgct
gtggagctacacttccgcggagaaaagttggcaaaggttgttggcagtctggcagcagag
aaagccaaacaaggaacaaaggtgtccgggatcctggtgaagaggaacttcaactaccac
atcgttgcaccaggagatctgccaaattacaccgatctagccatgagcacagtgacccag
agattgagtatagcctacacaggaacactgcctctacttcggtactacctgtctcagctc
gccggggacgtggaagccatcaaagtcaacgacaaacaggctctcaaggtgttcaagaca
atcacggttgtgtttgaaccaagaatggttgtcatagagtggatcgctaaccctgtgaca
gatatgtatgcggactccgttgtcacagtcatcctcagagcagagaaagatcccatgcct
cagaaaaatgtcccagcagtgatggtggtggaccgcagccacttccaggagtgtgtgatt
gacatgatgaaggagatgttcggacaggacagcacagggaagctgatcaaaaacaacaat
cttacagtcacagtggatgaaacggtagcagtgatcaacctagagactcaggaggttcag
tgtggagacgaggctctccaacatgtgatacagaactcagtcacaagactgtaccaagca
attacacctctcaaggttggatga
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