Haliotis cracherodii (black abalone): 139463952
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Entry
139463952 CDS
T10814
Name
(RefSeq) collagen alpha-1(II) chain-like
KO
K19719
collagen type II alpha
Organism
hcra Haliotis cracherodii (black abalone)
Pathway
hcra04512
ECM-receptor interaction
Brite
Glycosaminoglycan binding proteins [BR:
hcra00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
139463952
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
139463952
NCBI-ProteinID:
XP_071101519
LinkDB
All DBs
Position
Unknown
AA seq
1439 aa
AA seq
DB search
MRLQECVCVVVLLVVTVAAAPEKDRGCTYLGIQYENGAVWLPNNEDKCFECLCDNGEALC
SFLADCDGYASALTAEEKKMRVMAAVTGLPGEDGERGPQGPKGEAGDAGPDGTNGVPGPP
GSPGQSEMSADQAYRRYYASRFSNKAGGGAAYGPQYLQAQVGPIGPRGLSGSPGPPGPQG
GRGIRGETGDSGPQGAPGSRGQPGPPGPSGPEGDSGRNGEAGAPGLPGARGPPGPSGMPG
LPGGKGHRGFSGFPGKRGEQGISGETGAVGAPGPSGAPGPVGPRGQSGERGQDGSSGPSG
LRGVDGLPGQPGSPGAMGGSGPPGSPGMIGAKGDAGAKGPKGGVGPQGPRGENGMPGADG
EDGLNGPPGQSGSDGEKGTSGDPGAAGSPGFPGPRGPPGLLGSPGLPGLKGAAGSPGQGG
YKGEQGLKGSPGTPGDRGQPGPPGIQGRRGSRGGAGAAGPQGLSGERGLPGARGSPGSPG
NAGPKGEDGESGARGERGQTGSMGEAGRPGPPGPPGEAGAVGPAGPDGKSGPPGPSGPSG
NDGRPGEMGAPGPSGSPGQQGAQGPTGERGNNGKSGNPGQQGPRGPPGDNGPTGEMGPQG
APGPEGEPGPRGAEGPPGGPGFQGAPGLPGPPGEAGTEGEPGTPGGPGQAGRTGNRGERG
FPGERGPMGPVGEPGSPGPVGPAGNDGERGIPGEIGIQGDLGPQGPMGMPGERGPAGEMG
GKGDDGDAGPPGPDGNTGRPGLSGPPGEPGPPGLAGPPAEKGQPGDPGFRGQSGPPGASG
ERGNAGPDGEPGYPGLPGASGGTGNKGEAGLPGSKGEQGDGGAAGEPGSQGPSGVPGIQG
RKGPRGEQGVAGIPGEPGAPGAPGSQGLSGQQGLPGPAGPAGTPGIKGARGSTGNMGQAG
KNGAPGQSGSPGQKGNRGEDGSPGSSGPTGPQGASGERGEPGMPGPPGETGPGGPQGPNG
ARGANGRRGSDGLPGKPGPPGPVGGPGSNGPTGPSGAPGADGAAGLPGRQGEAGIIGDAG
RVGPSGLPGLQGPAGPSGPVGEAGIRGERGAIGPLGPRGPQGLRGSPGVQGEQGVDGEEG
DAGKNGDKGDPGYMGLPGLPGPEGPIGENGSPGPRGPAGERGNDGTRGQPGPAGEDGPGG
PRGAPGPRGPAGEDGRRGSAGLPGNPGPPGPPGESVYGRAMTGWATGSKGPGYMGDVPSA
EGEPEEARNAIKALKDVEEEIKKLRDPTGTKDAPGRTCHDLFKNNPEITDGWYFIDPNGG
GISDSFEAECLFNGKRTETCLHPIQTGYESQQWFTRKENPEAHVWFAETFDESGFFNYGV
HQSQVKYLHQMSSRARQDIAFSCKNTVIIADQAPGNIRKAIRLGSFDEEIMGPVAKKPYR
FRVKSDTCMTSNGKYGETIIEVRGRGQRVERMPIIDVGLYDVGGEDQEFGIQIGPACFS
NT seq
4320 nt
NT seq
+upstream
nt +downstream
nt
atgcgccttcaggagtgtgtctgtgtagtggtacttctggttgttacagtcgcagccgcc
ccggagaaagatcgagggtgcacatatctaggaattcagtacgagaacggagcagtatgg
ctgccaaataatgaggacaaatgttttgaatgtctttgcgacaatggcgaggctctctgt
tccttccttgccgactgtgacggttacgcctccgccctcaccgcagaagagaaaaagatg
agggtcatggctgccgtcaccggcctgcctggtgaggatggagaacgaggcccacaaggt
ccaaagggagaggcaggagatgccggtcctgatggaactaatggtgtccccggaccccct
ggctccccaggacagagcgagatgtcagctgaccaggcttaccgccgttactacgccagc
aggttctccaacaaagctggtggtggagctgcctacggacctcagtatcttcaagctcaa
gttggacccattggaccacgtggattgagtggatctccaggaccacccggaccccaagga
ggccgtggaatcagaggtgaaactggagacagcggaccacaaggagcccccggaagccgt
ggacagcctggaccacctggaccaagcggacctgagggtgacagtggacgtaatggtgaa
gcaggagctcctggtctccctggcgctaggggaccccctggaccatctggcatgcctgga
cttcctggtggaaagggacacagaggtttctctggtttccctggaaaacgcggagagcag
ggtatttcaggagagactggtgccgtcggtgccccaggtccatccggagctcctggtcca
gttggcccccgtggtcagtctggcgagaggggtcaggatggttcttctggaccttcaggt
cttcgtggtgttgatggcctgcctggacaacctggatccccaggagctatgggaggatcc
ggacctcctggatctccaggaatgattggagctaagggtgacgctggtgctaagggaccc
aagggaggagttggaccccagggtcctcgtggagagaacggtatgcctggagctgacgga
gaggatggactgaacggacctccaggacaatcaggaagcgatggcgagaagggcactagt
ggtgatccaggagcagccggatctccaggattccctggaccccgtggaccccccggactc
ttgggaagccccggattgcctggtcttaagggcgctgctggatcccccggtcaaggtgga
tacaaaggcgaacaaggtctgaagggttccccaggtacccctggcgacagaggacaaccc
ggaccccccggaatccagggaagacggggtagccgtggtggtgctggtgccgccggaccc
cagggactcagtggagagaggggtcttcccggtgcacgtggaagtcctggaagtccaggt
aacgccggacccaagggagaagatggagagtcaggtgcccgtggagagaggggacagaca
ggctctatgggagaggctggacgcccaggtccccccggaccccctggtgaggcgggtgca
gtgggaccagctggacctgatggaaaatctggaccacctggaccttctggtccatctggt
aatgatggacgccccggcgagatgggtgcccctggcccctccggttccccaggacagcag
ggcgctcaaggcccaactggagagagaggaaacaacggcaagtctggaaaccctggccaa
caaggacctcgtggaccccccggagataacggaccaactggtgaaatgggaccccaggga
gctcctggacccgagggagagcccggccccagaggcgctgagggaccccccggaggacct
ggattccagggtgccccaggtcttcccggaccccccggagaggcaggaacagagggcgag
cccggcacacccggaggacccggtcaagccggacgcactggaaacaggggagagcgtggt
ttccccggtgaacgcggacccatgggacctgttggcgagcccggatcaccaggtccagtt
ggacccgctggaaatgatggcgagagaggtattcccggagagattggtatccagggtgac
ctaggtcctcagggacccatgggtatgccaggagagcgcggtcccgctggagagatggga
ggaaagggagatgatggtgacgcaggacccccaggccctgatggaaatactggccgcccc
ggtctttcaggtccccctggagagcctggcccccctggtcttgccggtccccctgctgag
aagggacaacccggtgaccctggcttccgtggacagtccggaccccctggtgcctctgga
gaacgcggaaatgctggtcccgatggagagcccggatacccaggtcttcctggtgcctcc
ggaggtacaggtaataagggagaggcaggtctgcctggatctaagggagagcaaggtgac
ggtggcgctgctggtgaacccggaagtcaaggaccatctggtgttcctggtattcaaggc
cgcaagggtccccgaggagaacagggtgtggctggaatccccggtgagccaggtgccccc
ggagccccaggatcccagggtctctcaggtcaacaaggtctccccggacccgctggacct
gctggcactcctggtatcaagggagcacgtggatccactggcaacatgggacaggctggc
aaaaatggtgctcccggacagtccggatctccaggacagaagggtaaccgtggagaggat
ggttcacctggatcatctggaccaactggtcctcaaggtgcctcaggagagcgcggtgag
ccaggtatgcctggaccacctggtgagactggacccggaggaccccaaggacctaatgga
gctcgtggagctaatggacgtcgtggaagcgatggacttccaggaaaacctggaccacct
ggaccagttggaggtcccggctccaacggaccaacaggaccctctggagctcccggagct
gatggtgccgctggtcttccaggacgtcaaggcgaggctggaattattggagatgccgga
cgagttggaccctcaggcctaccaggacttcagggtcctgctggacccagtggaccagta
ggcgaggccggtatacgaggagaaaggggagcaattggaccacttggaccccgtggaccc
cagggattgagaggttctcccggagttcaaggagagcaaggagttgatggagaggaggga
gatgctggcaaaaatggagacaagggagacccaggctacatgggacttcctggattaccc
ggacccgagggtccaattggagagaatggttcaccaggacctcgtggaccagctggagag
aggggtaacgacggtacccgtggacagccaggaccagcaggagaggacggacccggtggc
ccacgtggtgcccccggcccccgtggacccgctggagaagatggaagaaggggatccgcc
ggtcttcccggaaatccaggaccccccggacccccaggagagagcgtgtacggccgtgct
atgaccggctgggccactggatccaagggacctggctacatgggtgacgtaccatccgcg
gagggtgaacctgaggaggcacgtaacgccatcaaggccctgaaggatgttgaggaggag
atcaagaagctgagggaccccactggaaccaaggacgcccctggtcgtacctgccatgac
ctgttcaagaacaaccccgagatcactgatggttggtacttcattgatcctaatggtggt
ggtatcagtgattcctttgaagctgaatgtctcttcaacggaaaaaggaccgagacttgc
ttacacccaatccaaactgggtatgagagccaacaatggttcaccaggaaggagaaccca
gaagctcacgtgtggttcgcagagactttcgatgaaagtggctttttcaactatggcgtc
caccagtctcaagttaagtacctccaccaaatgagcagccgtgctcgccaggatatcgca
ttcagctgtaagaacaccgtcatcatcgccgaccaagccccaggcaacatcaggaaggct
atcaggctcggcagcttcgacgaggaaatcatgggaccagttgccaagaaaccatacaga
tttagagtaaagtcagatacatgcatgacaagcaacgggaaatatggagaaacaataata
gaagtccgcggccgtggacaacgcgtagaaagaatgccaattattgatgtaggactttat
gatgtcggtggagaagatcaagaatttggtattcaaatagggcccgcttgcttcagctga
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