Haliotis cracherodii (black abalone): 139471609
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Entry
139471609 CDS
T10814
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG8-like
KO
K18734
protein SMG8
Organism
hcra Haliotis cracherodii (black abalone)
Brite
KEGG Orthology (KO) [BR:
hcra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hcra03019
]
139471609
Messenger RNA biogenesis [BR:
hcra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
139471609
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg8_Smg9
HcgB
Motif
Other DBs
NCBI-GeneID:
139471609
NCBI-ProteinID:
XP_071110090
LinkDB
All DBs
Position
Unknown
AA seq
923 aa
AA seq
DB search
MAAFLDIFSFPPNFDIHTLPNRDRKVCVVSIIGKSRLNGFATKASILNPILERDVFMGGD
SYIGGQIDKGDIECFYDSDTQVVYLHHKSLGDTHTLVERCQKILNNKTGDIVALWEDEDF
KYAKTILLLLNISHIVLLCHPGNTFDISYVKLFRSLDAVRMKLQTFMTETLQGLSISKDW
LLGARPCSPRLLFYFDTPTFEMAPDDIDTGKPRALKNPPLKRLVHNIEDQIYRILRKSRI
ITNISNNSLFAVPANQEFVYVNSRPNEATDPITVFLQNLRINSAVAKDSESPRSRSYATN
RRTNQASGDTLRTTVTMFSRPENSFKEFLWQHIDQAFTKGFDDNVGRNPVPAVFEMASSE
TWFAVAIRLYKFFFSDSPEGKVSTHLTTLRSLLETDVRFSENRCSKILPLAESAYQQDLP
QHYITTYHLSKLAQAKRVFAQFARGPAFDKYMVQLEEACETWWKSGHQQCEAVSLTGNLC
MNPLHRLLTEEETDANNVLPVSSHSSQLKSKAACNCGQTQADKDDPFDHMYANYEFYKAL
EETCCSKLEHMDFPVFKPSTSEVRAGQVTPVVAKAPHLKTGLRDSLKSEGTGSGLTNLSL
ALSLGQSGGSDLTYGHRSESSLNPENSQQADPGHQTETSEPEQVQQHPGHDTETAEPEQV
HPAATELKISNSATRQHSTTEYLPGMIHSDSPSGLLPKFCSWSLCSLGPSSMYMHTQGLD
LPGFLQGSNFLLPWDITVRTEKEKWPTVGETAGKKARQRRLPIKEVGEVTLRVFLGNEYE
CPRGHRFFCSGPEKIIKVSSTSTVKDNANKLLTMDMPLYCPCHCRSAKGYMAQLMRIFVV
TPDGPIRVQLKPQIQPAPGSSPLFYPGNDESTTLPPGQIWVLRLPHVYLGDHGVYSMPSD
PQQISLCHMKKGLFQYKEVSADG
NT seq
2772 nt
NT seq
+upstream
nt +downstream
nt
atggctgctttcttggatatcttttcttttccaccaaattttgacattcacactcttcca
aacagagacagaaaagtatgtgttgtctccatcattggaaaaagtcgtctgaatggattt
gcaaccaaagcttcaatattaaacccaatcctagagagagatgtattcatgggaggagac
agctacataggtggccaaattgacaagggtgacattgagtgtttctacgacagcgacacc
caagtagtgtacctccaccacaagtccctcggggatacacacaccctcgtggagagatgt
cagaagatcctcaacaacaagacaggggatattgtggccttgtgggaagatgaggacttt
aaatatgctaagacgattctactcctcttaaatatttcccacattgtgttgctgtgtcac
ccaggcaacacgtttgacatcagctatgtgaagctgttcaggagtctggatgctgtcaga
atgaagctgcagaccttcatgacagaaacacttcaaggactgtccatatctaaggactgg
ttgctaggagctcgaccttgttcgccccgcctgctgttttattttgacacaccgactttt
gagatggcccctgatgacatcgacacaggaaaacccagggctttgaaaaatccaccactt
aagagacttgtgcacaatattgaagaccagatctacagaatattgagaaagtcgagaatc
attacaaatatcagcaacaactcactgtttgctgtgcccgccaaccaggagtttgtgtac
gtcaacagtcgaccgaatgaagccactgaccccatcaccgtgttcctacagaacctccgc
atcaactcggctgttgccaaagattcagagtcgccacgtagtcgcagctatgcgaccaat
cgacgcacaaaccaggcatctggggacacactgaggaccacggtgacaatgttcagtcga
ccagagaacagcttcaaggagttcctttggcagcacatagaccaggctttcaccaagggc
tttgatgacaatgtcggtagaaacccagtccctgccgtgtttgagatggccagcagtgag
acatggtttgctgtggctattcggctatacaaattcttcttctcggactcccctgaaggg
aaggtgtcaacccacctcaccacactcagatccctgctggagacagacgtcaggttctca
gaaaaccgatgctccaagatcttgccactagctgagagtgcctaccaacaagacttgcct
caacactacatcaccacctaccatctgtctaagctagctcaagcgaagcgcgtgttcgcc
cagtttgcgcgaggtcctgcgtttgacaagtacatggtgcagctggaggaggcatgcgag
acctggtggaagtcaggacaccagcagtgtgaggctgtcagtctcaccggcaacctgtgt
atgaaccctctgcaccggctgctgacagaggaggagactgatgccaacaatgtcctccct
gtgtccagtcactccagccagctcaagtccaaggcagcctgtaactgtggccagactcag
gcagacaaggacgacccgtttgatcacatgtacgccaactatgagttttacaaagccttg
gaggaaacatgttgcagcaaactggagcacatggactttccagtgttcaaacccagcacg
agcgaggtccgagcaggtcaggtgacccctgtggtggccaaggcacctcacctgaagaca
gggctgagggacagtctcaagtcggaggggacaggatccggtctcactaacctcagtctc
gctctcagtttaggtcagtctgggggaagtgacctcacatacggtcatcggagtgagtcg
agtctgaacccagaaaacagtcagcaggctgaccctggccaccaaacggagacgtccgag
ccagagcaggtgcagcagcatccaggccatgacactgaaactgcggaaccagaacaggtg
catccagctgccacagagctgaaaatcagtaacagtgccacgagacagcactctacgacc
gagtatctgccggggatgattcactccgactccccatccggactcctgcccaagttctgt
tcgtggtctctgtgtagtctcgggccatccagcatgtacatgcacacacaaggtctggat
ctaccgggcttcctgcaagggagcaacttcctgctgccctgggacatcacggtccgcacc
gagaaggaaaaatggccgacagtcggcgagacagcagggaagaaggctcgacagaggcgg
cttcctatcaaggaggtaggggaggtcactctgagggtgttcctgggtaatgagtacgag
tgtcctcgaggtcaccgtttcttctgcagcggtcctgagaagataataaaagtttcaagc
accagcactgtgaaggacaatgccaacaagctactgaccatggacatgcctctgtactgc
ccctgtcactgcaggagtgccaagggatacatggcccaactgatgcggatatttgtggtg
acgccagacggaccaatcagggtgcagctgaagcctcaaatccagccagcgccagggtca
agtcccctgttctaccccggcaatgatgagtccacgactttaccccctggacagatctgg
gtgctacgcttgcctcacgtgtaccttggtgaccatggcgtgtacagcatgccctctgac
ccccagcagatttcactgtgtcacatgaagaaaggtctgttccagtacaaggaggtgtca
gcagatggttga
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