Haliotis cracherodii (black abalone): 139477416
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Entry
139477416 CDS
T10814
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit-like isoform X1
KO
K07466
replication factor A1
Organism
hcra Haliotis cracherodii (black abalone)
Pathway
hcra03030
DNA replication
hcra03420
Nucleotide excision repair
hcra03430
Mismatch repair
hcra03440
Homologous recombination
hcra03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
hcra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
139477416
03420 Nucleotide excision repair
139477416
03430 Mismatch repair
139477416
03440 Homologous recombination
139477416
03460 Fanconi anemia pathway
139477416
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hcra03000
]
139477416
03032 DNA replication proteins [BR:
hcra03032
]
139477416
03400 DNA repair and recombination proteins [BR:
hcra03400
]
139477416
Transcription factors [BR:
hcra03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
139477416
DNA replication proteins [BR:
hcra03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
139477416
DNA repair and recombination proteins [BR:
hcra03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
139477416
MMR (mismatch excision repair)
139477416
DSBR (double strand breaks repair)
HR (homologous recombination)
139477416
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
CompInhib_SCIN
GldN
Motif
Other DBs
NCBI-GeneID:
139477416
NCBI-ProteinID:
XP_071116083
LinkDB
All DBs
Position
Unknown
AA seq
622 aa
AA seq
DB search
MPPQLSSGSIEEIIAGNTPDSPILQIMSSKKISAGGGADRYRLLLSDGKHSYSHAMLATQ
LNELMEQNEIDNLSVVQVNKYLCNTLQGDRRVMILLDVKVVKKGSEVGERIGNPVPFKPG
QENTAPVPPNGQSAVSNGPAQVNGVSNSSSAKSPYNRAQTTNRSPQKPSGGAGNYSIRGG
AGPSTPGSSRVHTIASLTPYQNRWRIRARVTQKSGIRTWSNSRGEGKLFSVNFLDESGEI
RATGFNEAVDRFYELLEVNKVFFVSRATLKTANKQYSNVQNDYEMTFNPDSQIEICNEEC
DLPTMTFEFVKINELDKHQSNALIDIVGVVKVCQDLSTVVGRQSQKEITKRDLQIVDQSG
MGVNLTLWGNDAQAFDGSASPVIAVKGARLSDYGGRSLSVLASSQLIVNPDIREAHMLRG
WFDRDGQSMDFDSYRNEGGSGGAGMATNWKTFQQVKSDNIASMDKADYFTSKGTVVFLKK
DNCMYKACPTEQCNKKLVDQGNGLYRCEKCAREFPNYKWRMILNANLADYSDNQWATCFQ
DSAEVLLSVKADELGSLRDSNEASFDQVFQDALFKSYIFKFRAKMEMYNDEQRLKTVCMS
ATPIDWTEYGKRLVDEINKLTG
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgcctcctcaactttcttccggttccattgaggaaatcatagcaggcaacacacctgat
agcccgatactacagataatgagttccaagaaaatctcagcaggtggaggggcagacaga
tatcggctgctgttgtcagatggaaagcacagctactctcatgccatgttggcgacgcag
ttgaacgagttgatggaacagaatgagatcgacaatctgagcgttgtgcaggtcaacaaa
tacctgtgtaacacgctacagggggacaggcgagtgatgatcctgctggacgtaaaggtt
gtcaagaagggttcagaggtcggggagagaattgggaacccggtgcctttcaaacctggc
caggaaaacactgcaccagtaccaccgaatggacagagtgcagtttctaatggaccagcc
caagtgaatggtgtcagcaattcatccagtgccaagtctccatacaacagagcacagacc
acaaatcgttccccacagaaaccgtcggggggtgctggcaactacagtatccggggcgga
gctggaccctccacccccgggtcatctcgtgttcacaccattgcaagtctcaccccctac
cagaacaggtggcggatcagggctcgagtgacccaaaagtccgggattcggacgtggagc
aactcccgcggggaggggaagctgttcagtgtcaacttcctggacgagtctggagaaatc
agggccacaggtttcaacgaggctgtcgaccgattctacgagctcctggaggtcaataag
gtgttcttcgtcagtcgcgccaccctcaagacggccaacaagcagtactccaacgttcag
aacgactacgagatgacctttaaccccgactcccagatcgagatctgtaatgaggaatgt
gacctccctaccatgacctttgaatttgtcaagattaatgaactggacaaacatcaatcc
aatgccctgattgatatagtgggcgtggtcaaggtgtgccaggatctatccacagttgtt
ggtcgtcaaagtcagaaggaaatcactaagcgagatctgcagattgtcgaccaatcaggg
atgggggtgaacctcaccctgtgggggaatgatgcccaggccttcgatggcagtgcgagt
cctgtgatagccgtgaagggtgccaggctgtctgactatggagggaggtcgctgtctgtg
ttagccagcagtcagctgatcgtcaacccagatatccgagaagctcacatgctgcggggc
tggtttgaccgggatggacaaagcatggacttcgacagctaccgcaacgagggaggcagc
ggaggggcaggcatggccacaaactggaaaacgttccagcaagtcaagtctgacaacatc
gcatctatggataaggctgactacttcaccagcaagggaaccgttgtgttcttgaagaaa
gacaactgcatgtacaaggcgtgccccacggagcagtgtaacaagaagctggtggaccag
ggcaacggcctgtaccgctgcgagaagtgtgcccgcgagttccccaactacaagtggagg
atgatcctcaatgctaatctggcagactactccgacaaccagtgggctacctgcttccag
gattctgctgaggtcctcttgtcggttaaagctgacgagttgggaagcctccgtgattct
aatgaagccagttttgaccaggtcttccaagatgccttgttcaaatcctacatcttcaag
ttccgggcaaagatggagatgtacaatgacgagcagcgcctgaagactgtctgtatgtca
gcaacaccaattgattggacagaatacggcaagcggttggtagacgaaataaacaagcta
acgggttga
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