Haliotis cracherodii (black abalone): 139477734
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Entry
139477734 CDS
T10814
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
hcra Haliotis cracherodii (black abalone)
Pathway
hcra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hcra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
139477734
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hcra03019
]
139477734
03012 Translation factors [BR:
hcra03012
]
139477734
Enzymes [BR:
hcra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
139477734
Messenger RNA biogenesis [BR:
hcra03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
139477734
Translation factors [BR:
hcra03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
139477734
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
nSTAND3
ATPase
AAA_22
AAA_19
Myosin_head
AAA_16
NPHP3_N
NB-ARC
PhoH
ABC_tran
TsaE
AAA_23
Motif
Other DBs
NCBI-GeneID:
139477734
NCBI-ProteinID:
XP_071116232
LinkDB
All DBs
Position
Unknown
AA seq
1092 aa
AA seq
DB search
MIRRLLFAADASNLTRFLSTADMYGRGRGQRSDSWGGRSGRGGRSYGGRRHEDDGDRHGR
RDRGHQRHGGRGWRDSNVDGSNDGDSRGDGGRGRPPPGLRGRDIGMWYARRSKDKKERQD
REQRPTVAMDSSRENHIRDLLDKINSSEPRVDMFDNQHAGPASQSDSLDNKAWASSAPPD
MFDNPYGEASSRPQTAGKGASAFPKTRDLRDDKEEEDTEEEVPSMSAIIEYSKAEDEYPL
AESSVDFEGAKYADEPWDQLGHLSDSLLKEYNEKQLQPDFRKMMAFREKLPSFEMREKLM
DDINNNQVVVISGETGCGKTTQVPQFILDDYIQNGIGSQCRVICTQPRRISAISVAERVA
AERCERCGGTDSSVGYQIRLEYKLPRLNGSILYCTTGIVLKFLESDPLLQRATHIVLDEI
HERDLQSDFLMIILKDILPRRPLLKVILMSATLNAAMFSKYFNDCPQLNIPGYTFPVEEF
LLEDVIEMLKYQPDSSQPQRRRPRGKRSREADEERWNFEAWCRNLEGSYSRSTITALQNM
DFDKIDLDLIVSLIRHIALKKSEGAILVFVPGWEEISKIHKMMQADRMFTSDKFRIIPLH
SLMPTVNQREVFDRPAPGVRKVVIATNIAETSITIDDIVYVIDGGKIKVKDFQPENNLST
LEAKWVSKANSKQRRGRAGRVQPGVCYHLYTGLKWTEVDDYLPPEILRTRLEELCLHIKL
LKLGKIEPFIAKAIQQPSMEALHRAIITLQNLNALDKDENLLPLGYHLARMPVDPHTGKM
ILFGAMFCCLDPILTVAASLSFKDAFFIPLGKEEEADRARKALSEDSKSDHIMLIKAYEG
WERAKSRGNDRDYCWQNFLSPSTLRLLKDMKGQLAQLLLELGFIKNKNPKDLAANVNSNN
YGLVKAVLCAGLYPNVAKVAKCPRPGAPPYKMVSLYTRHEGKADVHPKSVNSRENFFESK
WMVFYHKLKTTKVYVHDCTMVSPYPLLFFGGDIGYGKDGDQDTVSVDDWIVFKASPTTAQ
LVKDLRRELDKLLEHKITHPGPTSWSEAEKEGALMRAISDLITTDEDQFQSGALPAHSTD
SQHHRRNRHKRW
NT seq
3279 nt
NT seq
+upstream
nt +downstream
nt
atgatcagacggctgctctttgcagctgacgcctcaaacttaacgagattcctgtcaact
gcagatatgtatggtcggggaaggggacagagaagtgactcctggggaggacgctcaggc
agagggggtcgaagttatggaggcaggaggcacgaagatgatggggacaggcatggcagg
agggaccgaggtcaccagagacatggcggcagaggctggagggacagcaatgtggatggc
agcaatgatggtgatagtcgcggtgacggcggccgtggtcggccccctcctggtcttcga
ggtcgagacattggaatgtggtacgcaagacggagcaaggacaagaaggagaggcaggac
agagaacagaggccaacagtggccatggactcaagcagagaaaatcacattcgtgacctc
cttgacaaaatcaactcttcagaaccacgtgtagacatgttcgacaaccaacacgcaggg
ccagcttcacaatccgactcgcttgacaacaaagcctgggcatccagcgctcctccagac
atgttcgacaacccgtacggcgaggccagcagtcggccgcagactgcagggaaaggagcg
agtgcgttccccaaaactagagacttgagagacgacaaggaggaagaagacacagaagag
gaagtgccgtccatgtcggccattatagaatattcaaaggcagaggatgaatacccgctg
gcagagagttccgtggattttgaaggtgccaagtatgccgatgagccgtgggatcagttg
ggtcatctgagtgacagtctcctgaaggagtacaacgagaaacagctgcagcctgacttc
cggaagatgatggcgttcagggagaagctgccatcatttgaaatgagggagaaactgatg
gatgacataaacaacaaccaggttgttgtgatcagcggtgaaactggctgtggtaaaaca
acacaggtcccccagtttatcctggacgactacatccagaatgggatcgggtctcagtgc
cgagtcatctgtacacaacccaggaggatcagtgcaatatccgtggcagagagagtggcg
gcggagcggtgtgagaggtgtggggggacagacagcagtgtggggtaccagatacgtctt
gaatacaagttaccacgattgaatggctccattctctactgcacaactgggattgtcctc
aagtttcttgaatctgatccgctgctacagagagcgacccacattgtcctagatgagatc
catgagcgtgaccttcagtctgacttcctcatgatcattctcaaggacattctacctcgc
cgacctttactcaaggtcatactgatgagtgccacgctaaatgcagcgatgttctccaaa
tatttcaatgactgccctcagctgaacatccccggctacacattccctgtggaggagttc
ctgttggaggacgtcatcgaaatgctgaagtatcagccggactcaagtcagccacagcga
cggcgacctcgggggaagcgcagccgtgaggcggatgaagagagatggaactttgaggcc
tggtgcagaaacctggaggggagctactcccgctccaccatcacagccttgcagaacatg
gacttcgacaagatcgacctggacctgattgtctcccttatcaggcacattgctttaaaa
aagtcggagggagcgatcctggtgtttgtccctggctgggaggagatcagcaaaatccac
aagatgatgcaggcagacaggatgttcacctcagataagtttcgtatcatcccacttcac
tcactcatgccaaccgtcaatcagagggaggtgtttgataggccggcacctggggtcagg
aaggttgtcatagcaaccaatatagctgaaacaagcattactatcgacgacatcgtgtac
gttatcgatggcggcaagatcaaggtgaaggacttccagccagagaacaacctcagcacc
ctggaggccaagtgggtctccaaggccaactcgaaacagaggcgtggccgagcgggcaga
gtgcagcccggtgtgtgctaccatctgtacacgggactcaagtggacggaggtcgatgat
tacctccccccagagattctgcggactcgactggaggaactttgcctgcacatcaagctg
ttaaagttggggaagattgaaccgtttatagctaaggctatccaacagccatctatggag
gcgctacacagggccatcatcacactgcagaatttgaatgcattggacaaggatgagaac
ctgcttcctctcggctatcatctggcccgtatgccggtcgaccctcacacggggaagatg
atcctgttcggcgccatgttctgctgtctggaccccatcctcactgttgctgccagcctc
agcttcaaggacgccttctttatacctctgggcaaggaggaggaagctgaccgggcgcgg
aaggcgttgtccgaggattccaagagtgaccacatcatgctcatcaaggcgtacgagggc
tgggagagggcaaagtcccgaggaaatgatcgagactattgctggcagaacttcctgtct
ccgagcacattgcggctgttgaaggacatgaagggtcagctggcccagctgttactggaa
ctggggttcatcaaaaacaagaatccaaaagacctggctgccaacgtcaactctaataac
tacgggctggtgaaggcagtgctttgtgctggactttatcccaatgtagccaaagtggct
aaatgtccgagaccaggggcaccgccgtacaaaatggtgtcactctacactcgacatgaa
ggcaaagccgatgtacatcctaagtctgtcaactccagagagaatttctttgagtccaag
tggatggtgttctaccacaagttaaagacgacaaaggtgtacgtccacgactgcacgatg
gtgtcgccgtatccactgctgttcttcggaggagacattggttatgggaaggatggggac
caggacactgtgtctgtagatgactggattgtcttcaaagcctcgcccaccacagcacaa
ctagtcaaggacctgcgccgtgagttggacaagttactggagcacaagatcacccaccca
ggacccaccagctggagtgaggcagagaaggagggggctctcatgcgggccatatcagac
ctcatcactacagatgaagatcagttccagtccggggcactgccagcacattctacagac
tctcagcatcacagaaggaacagacataaacgttggtga
DBGET
integrated database retrieval system
