Haliotis cracherodii (black abalone): 139479029
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Entry
139479029 CDS
T10814
Name
(RefSeq) exosome RNA helicase MTR4-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
hcra Haliotis cracherodii (black abalone)
Pathway
hcra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hcra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
139479029
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hcra03019
]
139479029
03041 Spliceosome [BR:
hcra03041
]
139479029
03009 Ribosome biogenesis [BR:
hcra03009
]
139479029
03016 Transfer RNA biogenesis [BR:
hcra03016
]
139479029
Enzymes [BR:
hcra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
139479029
Messenger RNA biogenesis [BR:
hcra03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
139479029
Spliceosome [BR:
hcra03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
139479029
Complex C
U4/U6.U5 tri-SnRNP related factors
139479029
Ribosome biogenesis [BR:
hcra03009
]
Eukaryotic type
Pre-60S particles
Helicases
139479029
Transfer RNA biogenesis [BR:
hcra03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
139479029
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
AAA_22
nSTAND3
Motif
Other DBs
NCBI-GeneID:
139479029
NCBI-ProteinID:
XP_071117867
LinkDB
All DBs
Position
Unknown
AA seq
1031 aa
AA seq
DB search
MENSFGDDLFDVFDEKSDSNPAKQIEEKDASSTESLSDEKRAEDLLRQIVGKTKRAAGTE
FESQESKKQKTEDGTGDANTEVLPRIQVHRVETVEACLHEVAVPPDEEFVPLKPSQKKSA
KDFPFILDPFQKEAILCLENNQSVLVSAHTSAGKTVVAVYAIAMSLQVKQRVIYTTPIKA
LSNQKYRELFEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIFDE
IHYMRDKERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVVYTDFRP
IPLQHYIFPAGGDGLHLVVDENGDFREENFNTAMGVLKDAGDASKGDQRGRKGGSKSHES
NCFKIVKMIMERSFAPVIVFSFSRKDCEGYAMQMAKLDFNTEEEKGLVEEVFNNAIDSLS
DEDKKLPQVENVLPLLKKGVGIHHSGLLPLLKETIEILFSEGLIKALFATETFAMGLNMP
ARTVLFTAARKFDGKDFRWVTSGEYIQMSGRAGRRGLDERGIVILMVDEKMSPAVGKTLL
RGLPDPLNSAFHLTYNMVLNLLRVEEINPEYMLERSFYQFQNYAAIPDLVEKLRRKEEDY
RSMKIQNEDQVASYFKIRQQLDSLGHDMMHFIQKPAYLLPFLQPGRLVKVKNKEDDFGWG
VVINFQKKMDQSKATDDTGPLYIAEVLMYITKESAKSRKTTDIKPCPKGQRGEMQVVPVL
TTLIEGISAIRLYVPQDLKSNDKRQSVYKSLQEVEKRFPDGLPPLDPIEDMGIKDKKLQD
IIKKTEAFEHRLYSHPLHKDAQLEELYSLYDRKSRLGNEVKAIKSELKKKKSLLQMDELK
CRKRVLRRMGYATSSDVIEIKGRVACEISSADELLLTEMLFNGVFNNLTEQQSCALLSCF
VFQENSNEMPKLTEELSGPLRIMQDTARRIARVSLEAKLEHLEEEAYAETFRPHMMDVVN
AWCNGSTFAQLCKMTDIFEGSIIRCMRRLEELLRQMVQAAKAIGNTELENKFSEAIRRIK
RDIVFAASLYL
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
atggaaaattcttttggagacgacttgtttgatgtttttgatgaaaaatcagattcaaac
cctgctaagcaaatcgaagaaaaagatgcttcttccaccgagagcttaagcgacgagaaa
agagctgaagacctccttcgacagattgtcgggaaaactaagagagcagcagggactgaa
tttgaatcccaggagtcgaagaagcaaaaaacagaagatggtactggtgatgccaacaca
gaagtcctgcctcgaatccaagtacacagagtggaaacagtggaggcctgtttgcatgag
gtggctgtgcctcccgatgaagagtttgtgcctctcaaaccctcgcagaagaaatctgct
aaagacttccccttcatcctagatccgtttcagaaggaggcaattctctgtctggagaac
aaccagtcagtgctggtgtccgctcacacgtcagcgggaaagaccgtcgtagctgtgtac
gctattgccatgtcactacaagtgaagcagagagtcatctacacaacccccatcaaggct
ctgagtaatcagaaatacagagagctgtttgaggagttccaggatgtgggcctgatgacg
ggagacgtcaccatcaaccccaccgccagctgcctcgtcatgaccacagagattttgagg
agcatgttgtaccgtgggtctgaggtgatgagagaggtggcctgggttatatttgatgag
atccattacatgagagacaaagagaggggtgtggtttgggaagaaaccatcatcttgctg
cccgacaacgtgcactacgtgttcctctccgcaaccatccccaacgcccgccagttcgct
gagtggatctgtcacttacacaaacagccgtgccacgtcgtgtacacggacttccgcccc
attcccctccagcactacatcttccctgcgggcggagacggactccacctggtggtggat
gaaaacggagattttcgagaggagaacttcaacactgcgatgggtgtattgaaggacgca
ggtgatgcttccaagggagatcagcggggtcgtaaaggtggctccaagagtcacgagtcc
aactgcttcaagatcgtcaagatgataatggagagaagctttgccccagtgattgtgttc
agctttagccggaaggactgtgaaggatatgcgatgcaaatggccaaactagacttcaac
acagaagaagagaagggcttggtagaagaagtgtttaacaatgcaatagattcactgtcg
gatgaggacaagaaactaccacaggtggagaatgtgctgccacttctgaagaaaggtgtt
gggatccatcactcggggctgcttcccctgctgaaagaaaccattgaaattctcttctca
gaaggtctcatcaaggcgttatttgccacggagacatttgccatgggcttgaacatgccg
gctagaactgtgctgttcacggccgccaggaagtttgatggcaaggacttcagatgggtg
acgtctggtgagtacatccagatgagtggtcgggctggacgtcgtgggttggacgagaga
ggaatcgtcatcctgatggtggacgagaagatgagtccagctgtcggcaagacactgctc
aggggcctgcccgaccccctgaacagtgccttccacctcacctacaacatggtgctcaac
ctgctgcgtgtggaggagatcaaccccgagtacatgctggagcgatccttctaccagttc
cagaactacgccgccatccccgacctcgtggagaagctgcgtcggaaggaggaggactac
aggtccatgaagattcagaatgaggaccaggtggcctcatacttcaagatccgacagcag
ctggacagcctgggccacgacatgatgcacttcatacagaaacctgcctacctgcttccc
ttcctgcagcctggcagactcgtcaaggtgaagaacaaagaggatgattttggctggggt
gttgtcatcaacttccagaagaagatggaccagagcaaggcgaccgatgacacaggacct
ctctacatagctgaagtattgatgtatataaccaaggaaagtgcaaaatctcgtaaaaca
acggacataaagccttgtcccaaaggccaacgcggggaaatgcaggtcgtaccggtgttg
acgacgctgatcgagggaatcagtgcaataagactgtacgtcccacaggacctcaagagt
aacgacaagaggcagagtgtctacaagtctctccaggaggtggagaagcgcttccctgat
ggcttacctccccttgatcctatagaggatatgggcatcaaggacaagaagctacaggat
atcatcaagaaaaccgaagcctttgaacatcgtttatactctcatccactccataaggat
gcccagttagaggagctgtattccttgtatgacaggaagtctcggctcggtaacgaggtg
aaggccatcaaatctgagctgaagaagaagaagtccctgctgcagatggacgagctcaag
tgtcggaaacgcgttctccggagaatggggtatgcaaccagctctgacgtcatcgagatc
aaaggccgggtggcgtgtgagattagcagtgccgatgagctgctgctgacagagatgtta
tttaacggtgtcttcaacaacctgaccgagcagcagtcctgtgccctcctcagctgcttc
gtgttccaggagaactccaacgagatgcccaaactgacggaggagctctccgggccgctg
cgtatcatgcaggacaccgcgcggcgtatcgcccgggtgagtctggaggccaagctggag
cacctggaggaggaggcctacgccgagacattccgccctcacatgatggacgttgtcaac
gcttggtgtaatggatcaacatttgcccagttgtgtaaaatgaccgacatctttgaaggt
agtataatcaggtgtatgcggaggctggaggaactactcagacagatggtgcaggcagct
aaagccatcggaaacacagagcttgaaaacaagttctcggaagcgatcaggagaatcaag
agggatattgtattcgctgctagtctgtacttatag
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integrated database retrieval system
