Halomonas campaniensis: FF32_07150
Help
Entry
FF32_07150 CDS
T03198
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hcs
Halomonas campaniensis
Pathway
hcs03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hcs00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FF32_07150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hcs03021
]
FF32_07150
03400 DNA repair and recombination proteins [BR:
hcs03400
]
FF32_07150
Enzymes [BR:
hcs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FF32_07150
Transcription machinery [BR:
hcs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FF32_07150
DNA repair and recombination proteins [BR:
hcs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FF32_07150
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AIA74629
LinkDB
All DBs
Position
1600195..1604409
Genome browser
AA seq
1404 aa
AA seq
DB search
MKDLVKVLKSQSQSEEFDAIKITLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRMKHRGIICEKCGVEVTKAAVRRERMGHIELASPVAHIWFLKSL
PSRIGMFLDMTLRDIERVLYFESFVVIDPGMTTLERGQLLNDEQYFEALEEFGDDFDARM
GAEAVQELLKDIDLEEEINHLREEIPQTNSETKIKKLSKRLKLLEAFYHSGNAPAWMVME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYSKLQSLGYASTIKAAKKMVERELPEVWDILADVIREHP
VLLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMATNNVLSPANGEPIIVPSQDVVLGLYYMTREKINAKGEGMVFSDLNEVERAFGTQ
SVSLHARVKVRLDEVDVEEETGERSFHRRIYDTTVGRALLFRILPEGVPFSLIDQPMKKK
AISSLINEVYRRAGLKPTVIFADQLMYTGFRLATWSGASIGVNDFVIPDAKTEIVDAAEA
EVKEIEDQFSSGLVTAGEKYNKVIDIWSKANDKVAKAMMVGISKETVIDREGNEVEQDSF
NSVFIMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDLVITETDCGTENGLTLHPIIEGGDIIVPLSQRV
LGRVVAIDVIDPSNDEVLIPRGTLLDEKWCASLDTMGVDEIIVRSTITCDTAHGVCASCY
GRDLARGHQVNIGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRSSAVDSVQVKHGGKVR
LHNIKHVERADGKLVVVSRSSALAVADDHGREREYYKLPYGAELSVRDGDVVDGGAIVAK
WDPHTHPIIAEVEGKAQFIDLDEGVTMHRSVDEMTGLSSIEVIESAARPMAGRDKRPMVM
LKDAAGEYVSVSGSNTPVQYLLPGNSIISVDDGSTIGVGEVVARIPVEASGNKDITGGLP
RVADLFEARKPKESSILAEISGVVSFGKETKGKRRLTITPESGDPFEALIPKWRQIAVFE
GETVEKGEVISDGPSNPHDILRLLGVAELAKYITAEVQDVYRLQGVGINDKHIEVIVRQM
LRKVEISDSGDSDFITGDQAELVRVLEQNARLEKEGKFPAKYQRLLLGITKASLATESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLTHHAERRRKREDVERLF
NPSATEVEQELGAQLTALDSDDEL
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatttggtgaaagtactcaaatcgcaatctcagtccgaagagtttgacgcgatc
aagattaccctggcgtcgccggacatgattcgctcctggtcgtttggcgaggtgaagaag
cccgagaccatcaactaccgtacctttaagccggaacgggatggtctgttctgcgccaag
attttcggcccagtcaaagactacgagtgtttgtgcggtaagtataagcgcatgaagcac
cgcggcatcatttgtgagaagtgtggcgttgaagtcaccaaggctgccgtgcgccgtgag
cgcatgggccacatcgaactggcatcgccagtggctcacatttggttcttgaagtcactg
ccgtcgcgtatcggcatgttcctcgatatgaccctgcgtgatatcgagcgcgtgctgtac
ttcgaaagctttgtcgtcatcgatcccggtatgaccacgctggagcgtggtcagttactc
aacgatgagcagtactttgaagcgctagaagagttcggtgatgacttcgacgcccgcatg
ggtgctgaagctgtccaagaactgctgaaagatattgatctggaagaagagattaatcac
ctgcgtgaagagattccgcagactaactctgaaactaagattaagaagctttcaaagcgc
ttgaagctacttgaagcgttctaccactccggcaacgcgccggcgtggatggtcatggaa
gtgctgcccgtgctgccgccggatcttcgtccgttggtgcccctggacggcggccgcttc
gcgacctcagacctgaacgacctttatcgtcgcgtcatcaaccgtaacaaccgtctgaag
cgtctgcttgacctcaatgcgccggatattatcgtgcgtaacgagaagcgcatgctgcaa
gaagcggttgatgcgttgttggataacggccgtcgtggtcgtgccattacgggttctaac
aagcgtccgctgaaatcccttgccgatatgatcaaaggtaagcagggtcgtttccgtcag
aacttgctaggtaagcgcgtcgattactccggccgttcggtaatcactgttggtccgact
ctgcgtctgcaccagtgtggtctgcctaagaaaatggcgcttgagctgttcaagccgttt
atctactccaagctgcagtcgctgggctatgcctcaacgatcaaagcagcgaagaaaatg
gttgagcgcgaactgcctgaggtgtgggacatccttgccgatgttatccgcgagcacccg
gtactgcttaaccgcgcaccgacgctccaccgtcttggtatccaagcgtttgagccgctg
ttgatcgaaggtaaagcgatccagctgcacccgctggtatgtgccgcctacaacgccgac
tttgacggtgaccagatggcggtacacgtaccgctgaccctggaagcccagcttgaagcg
cgtgcgctgatgatggccaccaataacgtgctgtcgcccgctaacggcgagccgattatc
gtgccgtcgcaagacgttgttctgggtctgtattacatgacccgcgaaaagatcaacgcc
aaaggcgaaggcatggtgttctctgaccttaatgaggtagagcgcgcctttggtactcag
tcagtatcgctgcacgctcgcgtgaaagtgcgtctggacgaagtcgatgtcgaagaagag
accggcgagcgtagtttccatcgtcgcatctacgacacgacggttggccgtgcgctactg
ttccgcattctgccggaaggtgtgccgttctcgctaattgatcagccgatgaagaaaaag
gcgatctctagcttgatcaacgaggtgtaccgtcgggcgggcttgaagccgacggttatc
tttgctgaccaactgatgtacaccggtttccgtttggcaacgtggtcgggcgcctctatc
ggtgttaacgacttcgttattcctgatgcgaaaaccgagattgtcgacgctgcagaagcg
gaagttaaagagatcgaagatcagttctcttctggcctggtaaccgccggtgagaagtac
aacaaggtcatcgatatctggtcgaaggccaacgataaagttgccaaggcgatgatggta
ggtatctctaaagagaccgtcatcgatcgtgaaggcaacgaagttgagcaagactcgttc
aacagcgtctttatcatggctgactccggtgcgcgtggttctgccgcccagatccgccag
ctggcgggtatgcgtggtttgatggctaagccggatggctcgatcatcgaaacgccgatc
gtcgccaacttccgtgaaggtctgaacgtactccagtacttcatctcgacccacggtgcg
cgtaaaggtcttgcggatacggctctgaaaacggctaactccggttacctgacccgtcgt
ctggttgacgttgcccaggacttggtcatcactgagaccgattgtggcaccgaaaacggc
ttgaccctgcacccgatcatcgaaggtggcgacatcattgtaccgctgtctcagcgtgta
cttggtcgtgtcgttgcgattgatgttattgatccaagtaatgatgaagtgcttattccg
cgcggcacattgctggacgaaaagtggtgtgcatcgctagacaccatgggcgtagacgag
atcattgttcgttctaccattacttgtgacactgctcacggagtgtgtgcctcctgttat
ggccgcgacttggcgcgtggccatcaggtcaacattggtgagtctgtcggtgttatcgcc
gcacagtccatcggtgagccgggtacccagctgaccatgcgtacgttccacatcggtggt
gcggcgtctcgttcatcggcagtcgacagcgttcaggtcaagcatggcggtaaagtacgt
ctccacaacatcaagcatgtagagcgtgccgacggcaaattggtcgttgtctctcgttcc
agtgcacttgctgttgctgatgaccatggccgcgagcgtgagtactacaagctgccttac
ggcgccgagctgtctgttcgtgacggtgatgtcgtcgatggcggtgcgattgtcgcgaag
tgggatccgcacactcacccgatcattgccgaggtagaaggtaaggcgcagtttatcgac
cttgacgaaggtgtcaccatgcaccgtagcgtcgacgaaatgactggtctgtcgtctatt
gaggttatcgagtcggcagcccgtccgatggcaggccgcgataagcgcccgatggtgatg
ctgaaagatgctgctggcgagtacgtgtcggtgtctggatcgaatacgccggtacagtac
ctgctgccgggcaactcgattatctccgtcgatgatggctctaccattggtgtaggtgag
gttgttgcacgtattccggtagaggcgtctggtaacaaagatattaccggtggtctgccg
cgtgttgccgacttgtttgaggcgcgcaagccgaaagagtcgtcaatcttggctgaaatc
agtggtgtggtcagtttcggtaaagagacaaagggtaagcgtcgcttgacgattacccca
gagtctggcgacccgtttgaagcgttgatcccgaaatggcgtcaaatcgctgtcttcgag
ggtgaaaccgttgagaagggtgaagtaatctcggatggtccgagcaacccccacgatatc
ctgcggttattgggcgtggcggaactggccaaatacatcaccgccgaagtgcaagatgtt
taccgcctccagggtgtaggcatcaacgataagcatatcgaagttattgttcgccagatg
ctgcgtaaggtagagatctctgattcaggcgactctgactttattactggcgatcaagct
gaactcgtccgcgtgctagaacagaatgcgcgtctcgagaaagaaggtaaattcccggcc
aagtatcaacgcttgctgctgggtatcactaaggccagcttggccactgagtcgttcatt
tcagcggcgtcgttccaggaaacgacacgtgtattgaccgaggcagcggtaaccggcaag
cgcgattatttacgcggcctgaaagaaaacgtggtggttggacgtctgattccggcaggt
accggtctgactcaccacgcagagcgtcgtcgcaagcgcgaagacgttgagcgtctgttc
aatccctcggctaccgaagttgaacaggagcttggtgctcagttaaccgcccttgattca
gacgatgagctgtaa
DBGET
integrated database retrieval system
