Halomonas campaniensis: FF32_09130
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Entry
FF32_09130 CDS
T03198
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
hcs
Halomonas campaniensis
Pathway
hcs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hcs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FF32_09130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hcs03019
]
FF32_09130
03400 DNA repair and recombination proteins [BR:
hcs03400
]
FF32_09130
Enzymes [BR:
hcs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FF32_09130
Messenger RNA biogenesis [BR:
hcs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FF32_09130
DNA repair and recombination proteins [BR:
hcs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FF32_09130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
AAA_22
TniB
Flavodoxin_1
Motif
Other DBs
NCBI-ProteinID:
AIA74999
LinkDB
All DBs
Position
2008170..2010179
Genome browser
AA seq
669 aa
AA seq
DB search
MTSLSPQQTLKAVFGFDDFRGGQQAVVSRVLDGHSTAAIFATGAGKSLCYQLPALHLPHL
TLVVSPLLALMQDQLAFLARHGVAAASIDSTQDRATTRDVMERAKNGELKILMVSVERLK
NERFRHFLRQVQISLLVVDEAHCLSEWGHNFRPDYLKLPDYQRDFAIPQVLLLTATATPA
VIADMREKFSIVPENVITTGFYRANLELLVVPTMENRQQQLIDWLKPQMPPGNEAPTIIY
VTLQQTAEQVANALAAEGIAAQAYHAGLDSARRDDIQRQFMNGESPCIVATIAFGMGIDK
GNIRNVVHFDLPKSIENYSQEIGRAGRDGLPSTCLTIAGRDGLRVLENFVYGDTPEYVGI
LRLLEEISSAGQAQDRQWEVLLNTLSRNTNIRLLPLKTLLVRLEMHGIIAPRFAFLAEYR
LRYHIEPTALVGHFAGERAAFVRLLIDNIAIARTWGTVDFERLHQAGQAQQIDASRARVI
TALEYFQDKGWLTLEGKRMTDVYEICQPEFSVKAMASQLFNECLDRERIEIERLHSMLAL
FESQSCLTRRLAEHFGDTTFDGPLGTEQGRCGHCSVCYGNPVRLPDATPLPALSENDFIR
YASPLIERHTEQFGQPPNVQRLAHFLCGLTMPIFTPLKARGLNGFAVFEQRAYPEVRQWA
ERCLASSCS
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgacttcgctatcaccgcagcagacgctgaaggcagtattcgggtttgatgattttcgt
ggtggccagcaggcggtggtgtccagagtgttggatggacactctaccgcggcgattttt
gccaccggggcggggaagtcactctgttatcagttgcctgcacttcatcttccacacctg
acgctggtggtatcgccgctgctggcactgatgcaggatcagctcgctttcttggcacgc
catggtgttgcagccgccagtattgattccacccaagaccgcgctacgacccgtgatgtg
atggagcgcgctaaaaacggtgagctgaaaatccttatggtgtcggtggagcggcttaag
aacgagcgttttcggcactttctacgccaagtacagatatcgctgctagtggttgatgaa
gcacactgcctctctgagtgggggcataacttccgcccggattacctcaaactgccggat
taccagcgcgatttcgccattccccaggtactgctactgactgccacggccacgccagcg
gttatcgcggatatgcgtgagaagttttccatcgttccggaaaatgtcattaccactggc
ttttatcgcgctaacttagagcttctggtggttcccacgatggaaaatcgtcagcaacag
ctgattgattggcttaaaccgcaaatgccgcctggcaacgaagcgcccacgattatttac
gtcaccttgcagcaaaccgccgagcaggtggcaaacgcgctagcggccgaggggattgcc
gcccaggcctaccatgcggggctggattcagcccgccgcgacgacattcagcgccagttt
atgaacggcgaatcgccctgtattgtcgctaccattgcctttggcatggggattgataaa
ggcaatatccgcaacgttgtgcactttgatctgcctaaatcgattgagaattacagtcag
gaaattggccgagcgggtcgcgacgggttgccttcgacttgcttgacgatcgctgggcgc
gatggactgagggtgctggagaacttcgtttacggcgacacgcctgaatacgtgggtatt
ttgcgcttactggaagaaatttcatcagccggccaagcgcaagatcgtcagtgggaagtg
ctgctcaacacactttcccgaaatactaatatccgtttgctgccgctaaaaacgttgctg
gtgcggctggaaatgcacggcattattgcgccgcgctttgcgttcttagccgagtatcgg
ttgcgctaccacattgagcctactgccttggtggggcattttgcaggagagcgggcggcc
tttgtacgtttgttgatcgacaatatcgctatcgctcgcacctggggaacagtggatttt
gagcggctgcatcaggctgggcaggcacagcaaatcgatgcttcccgtgcccgcgtcatt
accgcgcttgaatacttccaggataaaggctggctgaccctggaaggtaagcgtatgacc
gatgtgtatgaaatttgtcagccggaattttcggtcaaggcgatggcaagccagttattt
aatgagtgtctagatcgggagcgaatcgaaattgaacggttgcactccatgctggcactg
tttgagtcgcaaagctgcctgactcggcggttagctgagcattttggggacaccaccttc
gatgggccacttggtaccgagcagggccgctgtggccactgttcggtatgctacggcaac
ccggttcggctgccggatgcgacgccattacccgcgctgtctgagaatgattttatccgc
tatgcctcaccgctgattgaacgccacaccgagcagttcggccagccgcccaatgtccag
cggctggcacacttcttatgcggtttaactatgccgatttttaccccactcaaagcccgc
ggccttaacggcttcgcggtctttgagcagcgtgcctaccctgaagtgcggcagtgggca
gagcgctgtttagctagctcctgcagttaa
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