Halomonas campaniensis: FF32_10495
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Entry
FF32_10495 CDS
T03198
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hcs
Halomonas campaniensis
Pathway
hcs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hcs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FF32_10495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hcs03019
]
FF32_10495
03009 Ribosome biogenesis [BR:
hcs03009
]
FF32_10495
Enzymes [BR:
hcs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FF32_10495
Messenger RNA biogenesis [BR:
hcs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FF32_10495
Ribosome biogenesis [BR:
hcs03009
]
Prokaryotic type
rRNA helicases
FF32_10495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
CMS1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AIA75258
LinkDB
All DBs
Position
2314893..2316605
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AA seq
570 aa
AA seq
DB search
MTSTSVASPSFGDLALLPAVLSAVEAQGYEIPSPIQAQTIPALLEGRDMLGQAQTGTGKT
AAFALPLLSRLELTRREPQVLVMAPTRELAQQVAASFSKYGQNLKGLEVAILCGGQEYRE
QLGALKRGAQVIVGTPGRIIDHLDRGSLKLDGLSALVLDEADEMLRMGFIDDVKRVVADT
PKDAQRVFFSATLPTEIERIVNRYLVNPVKVAIESRTTTGENIEQRIVRVDGGAKLEAVA
RILEVEPVDAAIVFVRTRAACTTLVEQLTARGVNAAGLSGDLDQSLRERTITRLKRGKVD
VLIATDVAARGLDVPRITHVINYDLPQDAEAYTHRIGRTGRAGRSGIAITFAGFREGRKV
GWMEQATGQKMTEMPLPDEAAIRAHRDDVFHHRVVAALTKGAEEQRALVERLVEEGHDAV
ELACAFAAMARADEAPIGRLQAPRKERTTRDSAPGGKPGGRRERSSAPSEGMIRYRVSVG
HKDGVKPGQLVGALANEGGIEGARIGRIDIRNAFSVVELPSGLPSTILAKMARARVAGRP
LEISEDSAPERAPRRRRDDGDAPVRRRERA
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgacctcgacttctgtcgcttcgccgagcttcggcgatcttgctctgttgcctgccgtt
ctctctgctgttgaagcacaaggctacgaaattccctcgccgatccaagcgcagacgatt
cctgcgttgctggaaggccgcgatatgctgggccaagcacaaaccggcaccggcaaaacc
gctgcatttgcattgccattgttatcgcgtttagaacttacccgtcgcgagcctcaagta
ctggttatggctccgacccgtgaacttgctcagcaggttgcggcttcattcagtaagtat
ggccaaaacctcaagggtcttgaagtagctatcctttgtggtggccaagaataccgcgaa
cagttaggcgcgctaaagcgcggtgcccaggttattgttggcacccctggccgtattatc
gaccatcttgatcgcggtagtctgaaactcgacggtctttcggcactcgtgctggatgaa
gctgacgaaatgctgcgcatgggctttatcgacgacgtaaaacgcgtggttgccgatacc
cctaaagatgctcagcgtgtgttcttctcggcaacgctgccgactgaaattgaacgcatt
gttaaccgctatctggttaatccggtaaaagtcgcgattgagtcgcgcacgacgaccggt
gaaaacattgaacagcgtattgtacgcgtcgatggtggcgctaagcttgaagcagtggca
cgcatccttgaggttgagccggttgatgccgctattgtcttcgtgcgtactcgtgctgct
tgtaccacgctggttgaacagctgacagcccgtggcgttaatgccgctggcttgtctggc
gatctagaccaaagcctgcgtgagcgcaccattacacgtctcaagcgtggcaaggttgat
gtgctgattgcgaccgacgtcgctgctcgtggtcttgacgttccgcgtattacgcacgtt
atcaactacgatctgccgcaagacgcagaagcctatacccaccgtatcggtcgtaccggt
cgtgcgggccgtagcggtatcgcgattacgttcgctggtttccgtgaaggccgtaaagtg
ggctggatggagcaggctaccggtcagaaaatgactgaaatgccgctgccagacgaagcc
gctattcgcgctcaccgtgatgacgtgttccatcatcgcgttgtagcagccctgaccaaa
ggtgctgaagagcagcgcgcactggttgagcgcctggtagaagaaggccatgatgccgtt
gagctagcttgtgcttttgccgcgatggcacgtgctgacgaagcgccgattggacgcttg
caagcaccgcgtaaagagcgtactacgcgtgatagcgcgcctggtggcaagcccggtggc
cgtcgcgagcgctcaagcgcacctagcgaaggtatgattcgttaccgtgtttctgttggc
cataaagatggcgttaagcctggtcaactggttggtgcactggcgaacgaaggtggcatc
gaaggcgcccgtatcggtcgtattgatatccgcaacgctttctcggtagttgaactaccc
agtggcctgccttccactattctggcgaaaatggcgcgagcccgcgttgctggtcgcccg
ttagaaattagtgaagacagtgcacctgagcgtgctccacgtcgtcgtcgtgatgacggt
gatgcacccgttcgtcgccgcgaacgcgcttaa
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