Halomonas campaniensis: FF32_12260
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Entry
FF32_12260 CDS
T03198
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
hcs
Halomonas campaniensis
Brite
KEGG Orthology (KO) [BR:
hcs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hcs03019
]
FF32_12260
Enzymes [BR:
hcs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
FF32_12260
Messenger RNA biogenesis [BR:
hcs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
FF32_12260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
AAA_22
DEAD
HA2_N
AAA_19
nSTAND3
AAA_16
NACHT
T2SSE
AAA_25
PhoH
Nexin_C
SRP54
Motif
Other DBs
NCBI-ProteinID:
AIA75584
LinkDB
All DBs
Position
2681001..2685014
Genome browser
AA seq
1337 aa
AA seq
DB search
METEPNVTTDTQTSHADAQNAYPLTALDEEIRHVMLRDAQQLARRVAGLKRRQRDRKPID
HGVQQVQRDLEKAKRLLANREALKVALDYPAELPVVERREDILNAIRDHQVVVVAGETGS
GKTTQLPKICLELGRGRKGVIGHTQPRRLAARSVAGRLAEEMSVPLGEQVGYQVRFNDQS
SPNTLVKLMTDGILLAETQHDPLLLRYDTLIIDEAHERSLNIDFLLGYLKRLLPKRPDLK
VIITSATIDVDRFAAHFGSANAPAPVVEVSGRTFPVDVHYRPLARSEEDEDDRTLQEGIL
HAVREIETIEREKGWLHGPRDVLVFLPGEREIRETADTLRRADLTGTEILPLYARLSNEE
QNRVFASHKGRRIVLATNVAETSLTVPGIRYVIDPGLVRISRYSYRAKIQRLPIEPISQA
SANQRKGRCGRVAEGVCIRLYDEEDFLSRPAFTDPEIQRTNLASVILSMLALKLGSIEAF
PFVDPPDSRFVKDGFRLLFELVAVDDQQRLTPLGRKLAKLPIDPRLARMVLAGAERGSLR
DVLIVVSALAIQDPRDRPADKRQAADQVHQRWHDPDSDFVALLNLWHGIENAREALSGNQ
LRRWCREHYINYLRMREWHDTFRQLRQLLRDMGIDVPAPLPRDEDESEEQAKQARRKTSG
KLHQALLSGLLSNLGTLLENREYLGARNRKFMIHPGSGLAKKTPKWVMAFELIETTKLFA
RTVAKIDPQWIEPQAQHLIKSSYSEPHWEMKRAQVVAFEQVTLFGLPIVARRRVHYGPIA
PQESRELFIRRALVEGEFQTKGEFFAHNRALIEEIEALEDRARRRDILVDEEALFAFYDE
RLPHDIVNGKGFEHWRKQVERESPDLLKFDIEALKARDANDVTQAQYPDHLTLAGVAYPV
SYHFDPDAEDDGVTLTVPAAMLPQLPVYALEWLVPGLLREKCIALLKSLPKSIRRQVVPI
PDWVDAALEMLVPDKRPLTEALGEFIRRRTGTRVHPDDWRLDLLAPHLIMNVRVVDHAGK
TLGQGRDVRALERRFEEAASRGAQALAEQANQAPALESLPSEPLPESRVTTQAGIRVEAY
PALVAEDSRFKVALFDHPAKAAAAHQMGVARLAISQQPDQVKAIKRLPGVEKCALLFAKV
GNKNELVDDLLLAVFTQVVATHPLPRSEKALKERLQTSEESLLAHAQTLLTHVEAALKGH
LAVTKILKGKLNFALALVYSDVSAQMKRLVYPGFIRDAGEWLTEYPRYTEAALIRLEKAA
RERGRDQMLMHDVQALETRFDARRKSERRGDAEDPELVAFGWWIQELRVSLFAQQLGTKM
PVSVKRLEKRWEELISV
NT seq
4014 nt
NT seq
+upstream
nt +downstream
nt
atggaaaccgagcctaacgtgaccaccgacacgcaaacttcccatgctgacgcccagaac
gcttatccactcaccgcattagatgaggagataaggcacgttatgctgcgtgatgcacag
cagctagcgcgtcgtgtggcaggccttaagcggcgtcaacgagacagaaagccgattgat
cacggtgtccagcaggttcagcgcgaccttgaaaaagctaagcggctgcttgctaaccgt
gaagcactgaaggtggcactggactatcctgccgagttgcctgtagtagaacgacgagag
gatatcctaaacgctatccgcgaccatcaggtagtagtcgtggcgggggagacagggtcg
ggtaaaaccactcagttgcctaaaatttgtctagagcttggccgtgggcgtaaaggggtg
attgggcatacccagccacgtcgactggcagcgcgtagcgttgccgggcggttagcggaa
gaaatgagtgtgccgctgggtgagcaggtgggctaccaagtgcgcttcaatgatcaaagc
tccccgaatacgctcgtaaagctgatgacggacggtatcctgctggcagaaacgcagcac
gatcctttgctgctgcgttacgacacgctgattattgatgaggcgcacgagcgcagtctt
aacatcgactttttgctggggtatttaaagcgcctgctgccgaaacgtcctgatctaaaa
gtcattattacctcagccaccattgatgtagatcgttttgctgcccatttcggcagtgcc
aacgcgcctgcgccggtggttgaagtctctggccgcacttttcccgtcgatgtacattac
cgcccgctggcgcgtagcgaagaggatgaggatgaccggacactgcaagaaggtattttg
cacgcagtgcgcgaaatcgaaaccatcgagcgtgagaagggctggctgcatggtccacgc
gatgtgctggtgtttttacccggggagcgtgagattcgtgagacagccgatacgttgcga
cgggctgacttaaccggcaccgaaatattgccactctatgctcggctttccaacgaagag
caaaatcgtgtcttcgcttcccacaaagggcggcgaattgtgctggctactaacgttgct
gaaacctcgctcacggtaccgggaattcgctacgttattgatcctggcttggtgcgtatc
agccgctacagctatcgggcgaaaatacagcggctaccgattgagccgattagccaggcc
agcgccaatcagcgtaaaggccgctgtggccgtgttgcggaaggggtatgtattcgtctt
tatgatgaagaggatttcctatcgcggccagcgtttaccgacccagaaattcagcgtacc
aatttagcgtcagttatcctttccatgctggcgctgaagcttggcagtattgaagccttt
ccctttgtcgacccgcccgatagccgattcgtaaaagatggctttcgtttgctgtttgag
ctggtagcggtagacgaccagcagcgcctgaccccgctgggccgcaagctcgctaagcta
cccatcgacccacgcctagcgcgcatggtgctggcaggtgccgaacgaggcagcctgcgg
gatgtgttgattgtggtatcggctttggcgatacaagaccctagagatcggcctgctgac
aaacgccaagcggcggatcaagtgcaccagcgctggcatgatcccgattctgatttcgtt
gcgttgttaaacttatggcatggcatcgaaaatgcccgcgaggctctctcaggcaaccaa
ctacgtcgctggtgccgcgagcactatattaactatctgcgcatgcgcgaatggcatgac
acgttccgacaattgcgtcagctgctgcgcgatatgggcatcgacgtgcccgcaccgctg
ccgagagatgaagacgaaagcgaagagcaggccaagcaagcgcgtcgtaaaacgtcagga
aaactgcaccaagcactgttatctgggctgctttctaacctgggaacactgctggaaaat
cgtgaatatctcggtgcgcgtaatcgtaagtttatgattcaccccggttcagggctggcg
aaaaaaacgccgaagtgggtaatggcgtttgagctgattgaaaccactaaattgttcgcc
cgtacagtggcgaaaatagacccccagtggattgagcctcaagcgcagcacttgataaaa
agcagctatagcgagcctcactgggaaatgaaacgtgcccaggtagttgcgttcgagcaa
gtaacgctgtttggtctgcctatcgttgcccgtcgccgcgtgcattatggtcctattgct
ccccaagagtcccgcgagctatttattcgtcgtgcgctagtggagggcgaatttcagact
aagggggagttttttgcccataaccgagcgctgattgaagaaatcgaggcacttgaggat
cgtgcacgtcggcgcgatattctggtcgatgaagaggcgttgtttgctttttatgatgaa
cgactccctcacgatatcgttaatggcaaagggtttgagcactggcgtaaacaggtggag
cgtgagtctcctgacttattaaaattcgatattgaggcacttaaagcgcgggatgccaac
gacgttactcaggcgcaataccctgaccacctaacgttggcaggggttgcctatccggtc
agctatcactttgatcctgatgcagaagatgatggcgttacgctgaccgtgcctgccgct
atgctgcctcagttgcctgtgtatgcccttgagtggttagtaccggggttgctgcgcgaa
aagtgtattgcgctacttaaatcactgccgaaaagcattcgtcgccaagtggtccccatt
cccgactgggtcgatgcagcgctggaaatgctcgtgcctgataagcgcccactgaccgag
gcgcttggcgagtttattcggcggcgaaccggcacgcgggtacatcctgatgactggcgg
ctagacctgctagcaccacatttaatcatgaacgtgcgcgttgttgatcacgctggcaaa
acgctgggccaggggcgtgacgtacgcgccctggaaaggcgctttgaagaagccgccagt
aggggagcccaggcgttagcagaacaggctaatcaggccccggcacttgaaagtctgcct
agtgagccgctccctgaatctcgggtgacgacccaggcgggtatccgtgtcgaagcttac
ccggcactggtggcagaagattcacgcttcaaagtggcacttttcgaccatcccgccaag
gcagcggcagcgcatcaaatgggtgtggcccgtttggcgatctcacaacagccggatcag
gtgaaagctattaagcgtttgcctggggtggaaaaatgcgcattgttgtttgcgaaggta
ggaaacaaaaatgagttggttgatgatcttttgctggcggtgtttactcaagtagtggct
acgcatcctctaccacgctctgagaaagcccttaaggagcgcttgcaaacttctgaagaa
agcttgttagcgcatgcccaaacactgttaacgcatgttgaggcggcgctgaaggggcac
ttagcagtaaccaaaattttaaaagggaagctcaattttgcattggcgcttgtttacagc
gatgtcagcgcgcagatgaagcgattggtttaccccggttttattcgcgatgcaggtgag
tggttaacggagtatcctcgttatacagaggctgcattaatccggctggaaaaagccgcg
cgcgagcgagggcgcgaccaaatgctgatgcacgatgtccaagcattagaaacgcgtttc
gacgcgcgccgaaaaagcgaacgcaggggcgacgcagaagacccagagttggtggcattt
ggttggtggattcaggagctccgggtgtctctgtttgcccagcaactgggtactaaaatg
cccgtttctgtgaagcgcctagaaaagcgttgggaagagcttattagcgtttaa
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integrated database retrieval system
