Halomonas campaniensis: FF32_13295
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Entry
FF32_13295 CDS
T03198
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hcs
Halomonas campaniensis
Pathway
hcs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hcs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FF32_13295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hcs03019
]
FF32_13295
Enzymes [BR:
hcs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FF32_13295
Messenger RNA biogenesis [BR:
hcs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FF32_13295
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
DUF6257
Motif
Other DBs
NCBI-ProteinID:
AIA75779
LinkDB
All DBs
Position
complement(2911626..2912822)
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AA seq
398 aa
AA seq
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MPFSKLGLSRPLVQAITELGYKTPTPIQEQAIPAILSGKDLIATAQTGTGKTAAFVLPLL
ERFSKAEALRGKRIRALILVPTRELAVQVEANVAQYAKHTQLTSMAVYGGVDTAPQKERL
IEGVDILVATPGRLLDLAHQRALHFDELEVMVLDEADRMVDMGFVDDIHRILVRLPENRQ
NLLFSATMTGDVRALAYGFSDSKMTDLAADISISPNIRAAANIKQWLITVDKDTKSALLS
HLINEQAWDQALIFVEKKHSAAKLVAQLEKRGIAADSIHGGRSQAMREKVLDQFKTGELK
YLVATGVAARGLDIGELSRVVNYDLPFQPEEYIHRIGRTGRAGASGEAISLVDISDFKNL
CAIEKRLKNTIERKEVEGFPVKKAVPASNLNHVKKSSR
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
atgccattttcaaaactaggcttatcccgtcctcttgttcaagcgattaccgaactaggt
tacaaaacgccaacgcccatccaggaacaagcgattcctgccattctttcgggcaaagac
ttaatcgccaccgcacaaacaggaacaggcaaaactgctgcctttgttctgcctctgtta
gagcgattcagcaaagcggaagcgttacgcggcaagcgcatacgcgcgctgattctggtg
ccgacccgcgagttagcggttcaggtcgaagccaatgtggctcaatacgctaaacacacg
cagttaacctctatggctgtgtatggcggtgtggataccgcgcctcaaaaagagcggcta
atcgaaggagtggatattctggtcgccacgccaggcaggttgctggatctggcgcatcag
cgtgcgctgcactttgatgaactggaagtcatggtattggacgaagcggacagaatggtt
gacatgggttttgtcgatgatatccacagaatcttagtacgcctgcctgaaaaccgtcag
aacctactgttttcagccaccatgaccggcgacgttcgcgccctcgcctacggtttttca
gatagtaagatgaccgacctggcggctgacatctccatctctcccaacatccgcgccgcc
gccaatatcaaacagtggctaatcacggtagacaaagacaccaagtccgccctattgagc
cacttgatcaacgagcaagcgtgggatcaggcgcttatttttgtcgagaaaaaacacagt
gcagccaagctagttgctcaactggaaaaacgcggcatcgcagccgattccattcatggc
ggcagaagccaggccatgcgcgagaaggtgttagatcagttcaaaactggcgaactgaag
tacctagttgccacgggtgtagccgctcgggggttggatatcggtgagctgagccgagtg
gtgaattacgatttaccttttcagccagaagagtacatccaccgtattggccgaaccggc
cgtgcgggtgcctcaggcgaagccatctctcttgtcgacatcagtgactttaaaaacctt
tgtgcgattgaaaagcgtttgaaaaacacgattgagcgcaaagaagttgagggcttcccg
gttaaaaaagcagtacccgcttccaacttgaaccatgttaaaaaaagcagtcgttaa
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