Halomonas campaniensis: FF32_13725
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Entry
FF32_13725 CDS
T03198
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hcs
Halomonas campaniensis
Pathway
hcs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hcs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FF32_13725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hcs03400
]
FF32_13725
Enzymes [BR:
hcs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FF32_13725
DNA repair and recombination proteins [BR:
hcs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FF32_13725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
AAA_30
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AIA75863
LinkDB
All DBs
Position
complement(2992800..2996249)
Genome browser
AA seq
1149 aa
AA seq
DB search
MSSFSLLEPPQPKGIRDTLYLTAPPGSATALALAQVALSAPLLVITPNTASAQRLEQDLA
FYSNVPVLPFPDWETLPYDSFSPHQDIISSRLRTLRLLQDGVRGIVLVPINTLMQRLPPV
SYIAGRVMTLKAGAKLNRETFRESLSRAGYRAVETVYEPGEYAMRGAIIDLFAMGMDEPI
RIDLFDDEIDTLRHFDPGNQRSTNKVDVIELLPAHEYSLSRSAIACFREQFETLFDVDPR
QCPLYNDALKAIPSPGLEQYLPLFFDETASLFEHVTDDTRVALLPGVFEAAEQHWQSIES
RYENLGVDPTRPLLPPLRAFIPVNDVFSAIKARPRIELTEDNTQRHALAPKAQALPSLAI
NARAKHPLNELATFLDAQQATRVLFVAESRGRREALEEVLAPLKLNLPHIDSFQDFLSST
NRIAITESLVGSGLWLTEPNVAVISETELFGDVVRQSRRREKATDDNELAVRHLSELREG
APVVHQAHGVGRYLGLETLEAGGQANEFLALSYADGAKLYVPVDSLHLISRYSGADDELA
PLHRLGSDQWEKARRKAAEKIRDTAAELLDIYARREAQEGFIYDTPGDEYVRFSASFPFE
ETPDQQAAIEAVISDMISPQPMDRVVCGDVGFGKTEVAMRAAFLAVQTGRQVVVLVPTTL
LARQHFENFRDRFADTAVNISLISRFTGGKEMTQTLESIKNGQTDIVIGTHKLLSKSVEL
PKMGLLIIDEEHRFGVAQKEKLKTLRAEIDILTLTATPIPRTLNMAMSGIRDLSIIATPP
ARRLSVKTFVQQRDSSVIKEALLREILRGGQVYFLHNEVKTIENAAEQIRELVPEARVAV
AHGQLPERSLERVMSDFYHRRFNVLVCSTIIETGIDVPSANTILIERADKFGLAQLHQLR
GRVGRSHHQAYAYLLTPPPKAMTRDAVKRLEAISASDDLGAGFTLASHDMEIRGAGELLG
DEQSGQMETIGYTLYMEMLDRAVKAIRAGKTPNIDAPFNTGVEISLNLPALIPDDYIHDV
QQRLVMYKRIANTQSDAELKELQVELIDRFGLLPQPLKNLIRQTRLRHRAEQLGVARIEA
GENRGRVLFNGSTQVDPLTLVTLIQKSPQHYRLDGSDTLRFEFPMETTEQRFDKVEALLT
TLNQKVAAA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgtcctctttttctctgctcgaaccgccccaacccaaagggattcgcgacacgctctac
ctcacagcgccgccgggcagtgcaactgccctggcgctggctcaggtcgcgttaagcgca
ccattattggttattacgccgaacactgccagcgcacagcgcctggagcaggatctggca
ttctatagcaatgttcccgttctaccctttccagactgggaaacactgccttatgacagc
ttctccccgcaccaggatattatctcgtcacgcctgcgtacgctgcgcttactgcaggat
ggcgtacgcggcattgtgctggtgccaatcaatacgctgatgcagcgtctgcctcccgta
tcatacatcgctgggcgcgtgatgacgctaaaagcgggcgctaagctaaatcgggaaaca
tttcgcgaatcgctatcgcgggcaggttatcgtgccgtagaaacggtctacgagcctggc
gaatacgccatgcgcggcgcaattatcgaccttttcgccatgggtatggatgagccaatt
cgtatcgatttgtttgatgacgaaatcgatacgctacgccattttgaccctggcaatcag
cgctctaccaataaagtcgatgtgattgagctactcccagctcatgagtattcactcagt
cgcagcgctattgcttgcttccgagaacagtttgaaacgctttttgatgttgatccgcgc
cagtgccctctctataacgatgcactgaaagccatcccctccccgggcttggaacaatat
ttgccactgttcttcgacgaaaccgcttctttatttgagcacgttaccgatgacacccgt
gtagcactgttgccaggtgtattcgaagcagctgagcaacactggcagtccattgaatca
cgctacgagaatttgggtgttgacccaacacgcccccttttaccaccgcttcgcgcgttc
attcccgttaatgacgttttttcggcgatcaaagctcgcccccgaatcgaactaaccgaa
gacaacacgcaacgccatgccctggcgccgaaagctcaagcactaccctcgctggcaatt
aacgctcgcgccaaacaccctcttaacgaactggctacctttctggatgcacagcaagct
acacgggtactgtttgttgccgagtcacggggacgcagagaagcgttagaagaagtattg
gcgccgcttaaattaaacctgccccatattgacagcttccaagactttttaagcagcact
aaccgcattgccattactgaaagtttggtaggcagcggcttgtggcttaccgaaccgaat
gtcgcggtgatcagcgagactgagctctttggcgatgtagtgcgccagagtcggcggcga
gaaaaagcgaccgacgacaacgaattggccgtgcgccatttatctgagttacgagaaggc
gcaccggttgttcaccaagcacatggcgtcggccgctacttggggctggaaacccttgaa
gctggtgggcaggctaacgaattcctggcgctttcatatgccgacggtgccaagctttat
gtcccggtcgatagcctgcatcttatttctcgctacagcggcgctgatgatgaactcgct
ccgctgcacaggttaggctcagatcagtgggaaaaggcacgccgtaaagcggctgagaaa
atccgcgacactgccgctgagctactcgacatctacgcccgacgggaggctcaggaaggc
ttcatttatgatacgccgggcgatgaatacgttcgcttctctgccagcttcccatttgaa
gaaacccctgaccagcaggcagccattgaagcagtaataagcgacatgatctctcctcag
ccaatggatcgcgtcgtttgtggcgatgtagggtttggcaagaccgaagtcgccatgcgt
gctgcattcctagccgttcagactggtcgccaagtagtggtgcttgtgcctactacgcta
ttagctcgccagcactttgaaaacttccgcgaccgctttgccgacaccgctgtgaatatt
agccttatttcacgcttcacaggcggcaaggaaatgacgcaaaccttggaaagcatcaaa
aatggccaaaccgacattgtaatcggtactcataaactgctgtctaaaagcgttgagctg
cccaaaatggggcttttaattatcgacgaagagcaccgctttggggtagcgcagaaagag
aaactcaaaacgctgcgcgccgaaatcgacattctgacgctaacggcaacaccgattccg
cgcaccttaaacatggccatgagcggcatccgagacctttcgattattgccaccccacca
gcacggcgcttatcggtcaaaacgtttgtgcaacagcgagatagcagcgtcattaaagaa
gccctgctgcgtgaaatattacgcggcggacaagtctactttttgcacaatgaagtcaaa
acgattgaaaacgctgccgaacaaatccgcgaactggtgccagaggcacgggttgctgtc
gctcacggccaattacccgagcgcagccttgagcgagtcatgtcagacttctaccatcgt
cgcttcaatgtgctggtgtgctctaccattatcgaaaccggcattgacgtgcccagcgcc
aacactattttgattgagcgcgccgataagttcggcttggcccagctacaccagctgcgt
ggccgtgttggacgcagccaccatcaagcatacgcttacctactaacgccgccccccaag
gcaatgacacgagatgccgtgaaacgtctggaagcgattagcgcctctgatgatctcggt
gctggcttcaccttagcaagccacgacatggagatacgtggcgcaggcgagcttctaggc
gacgagcagagcggccaaatggaaaccatcggctacacgctttacatggaaatgctggat
cgcgcggtaaaggctatccgtgcgggcaaaacgcctaacattgacgcccccttcaacacc
ggtgtcgagattagcctcaatctgccggcgctgattcctgacgactatattcacgacgta
cagcagcgcctggtgatgtataaacgtatcgccaatacccagagcgacgctgagcttaag
gagctacaagtcgagcttattgatcgctttgggctccttcctcagcccttgaagaacctg
atacgtcagactaggcttcgccaccgcgctgaacaactgggtgtagcgcgcattgaagcc
ggtgagaaccgtggacgagtgcttttcaacggctctacccaggtcgatccgctaaccctt
gtgacgcttattcaaaaatcgccacagcactaccgactggatggctcagacactttacga
tttgaattcccaatggaaaccaccgaacagcgttttgataaagtcgaagctctgcttaca
acactcaatcaaaaagtagcggcggcgtga
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