Halomonas campaniensis: FF32_14315
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Entry
FF32_14315 CDS
T03198
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hcs
Halomonas campaniensis
Pathway
hcs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hcs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FF32_14315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hcs03019
]
FF32_14315
Enzymes [BR:
hcs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FF32_14315
Messenger RNA biogenesis [BR:
hcs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FF32_14315
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_19
ResIII
P-loop_SecA
AAA_22
Sacchrp_dh_NADP
FANCF
HI1480
Motif
Other DBs
NCBI-ProteinID:
AIA75974
LinkDB
All DBs
Position
complement(3111991..3113247)
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AA seq
418 aa
AA seq
DB search
MSFSELGLHDDLLRAVTAQGYTQPTPIQQKAIPVVLEGRDMLASAQTGTGKTAGFTLPML
QRLANGKRPGKRQVRALVLTPTRELAAQVGESVTAYGKHLSLRSHIIFGGVGQQPQVDAL
KAGLDVLVATPGRLLDLHQQGHVDLSAVEILVLDEADRMLDMGFIHDIKRLLRLVPKQRQ
NLLFSATFSNDIQLLAQQLLNNPALIEVAPRNTTAEKIEQTIYRVDRDKKRELLAHLIQQ
HGWFQILVFTRTKHGANRLAEQLSKQDIPAMAIHGNKSQGARTRALGAFKSGDLQVLVAT
DIAARGLDINELPHVVNFDLPNVAEDYVHRIGRTGRAGSDGEAVSLVCVDEHGLLSGIER
LIKQNLPKRIEPGFEPDPNAKPEPIENGRRGQKQPRAKRKPEGQAANTGGERRRRARR
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgagcttttctgaacttggtctgcacgacgatttactacgcgcggttaccgcgcagggc
tatacgcagcctacccctattcaacaaaaagctatccccgttgtacttgaaggtcgcgac
atgctcgccagtgcccaaactggcacaggcaaaaccgctggctttacgttacccatgtta
cagcggttagcgaatggaaaacgtcccggcaaacgccaagtacgcgcgttagtgctcacg
cctacgcgtgagcttgctgcccaggtaggcgaaagcgtaaccgcttacggcaagcacctc
tctttacgctcgcatattattttcggcggtgttggccaacagccacaagtggatgcactc
aaagcggggcttgatgtattggtcgccacgccaggtcggctactagacttgcatcagcag
ggccacgtggatctatcggccgtcgaaatcctggtgctcgacgaagctgaccgcatgctc
gacatgggattcatccatgatatcaagcgcctattgcgtttagtgccaaaacagcgtcaa
aatctgctgttctctgcaacattctccaacgacatacaattattggcgcaacagttgctc
aacaatcccgcgttaatagaagtcgcacctcgcaacacgaccgctgaaaaaattgagcaa
accatttaccgagtagatcgtgataaaaaacgcgagctgctggcccatttaattcagcag
catggctggtttcagatactcgttttcacacgcaccaaacatggcgcaaaccgcttagca
gagcagctttctaagcaagacatacctgccatggccatccatggcaataagagccaaggg
gctagaacacgtgctctaggtgctttcaaaagcggtgatttgcaggtacttgtcgccact
gacattgccgctcgcgggctagatatcaacgaacttccccatgtcgttaatttcgactta
cccaatgtggcagaggactatgttcaccgtattggacgtaccggccgagcgggcagcgat
ggagaagcagtttcgctcgtatgtgtcgacgaacacggtttgctgagtgggattgagcgt
cttatcaagcaaaacctgcctaaacgtatcgaacccggttttgaacctgatcccaacgcc
aagcccgagccgattgaaaatggccgccgtggtcagaagcagccccgcgccaagcgtaaa
ccggaaggacaagcagccaatactggcggtgaacgtcgtcgtcgcgcccgtcgctag
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