Candidatus Hodgkinia cicadicola TETULN: HCTETULN_017
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Entry
HCTETULN_017 CDS
T03202
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor rpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
hct
Candidatus Hodgkinia cicadicola TETULN
Brite
KEGG Orthology (KO) [BR:
hct00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HCTETULN_017 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hct03021
]
HCTETULN_017 (rpoD)
Transcription machinery [BR:
hct03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HCTETULN_017 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Motif
Other DBs
NCBI-ProteinID:
AIC63767
LinkDB
All DBs
Position
15276..16499
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AA seq
407 aa
AA seq
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MKLAQSQIFSKLRRLQCVFFVNAVRLPTVTALMLSLLEEEYGDCLTGFKLVDRRLIKLCC
DFERSEHVGTGDCFVCEHETCDKRSWEYLLECEYSAGVITSCFQFRVCECRRCSLCWALV
KLLMHCLKDSNNWQVQMASLLLKANVDYKLAQLIRVVVTTLKRKWLFSALDCECALRPLA
LLRWALVCESKIRYYKRLVVSDSKWLAAWIFKTCFQYSFNKSSIVRAGRLGLLISVNRFD
FYSGFKFSTYARWWVRHRMLDMSTLSAATQTLTTSILKIRSVGTGQSVSSTVSVVKADRY
RAVSLDQAIGDNSDLHAVTADDAAVSVKCHDGVARAFKFLRRLALLSPREERVLRLRGCS
LTGSGRSLAKIGFELGVSKERVRQIELTAGARVRTLDEAIVPSLLCS
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
ttgaagcttgcgcagtcgcagatcttttcgaaactgcggcgtttgcagtgcgtatttttt
gttaacgctgttagactgccgactgtgacggcgttaatgctgtctttattagaagaggag
tatggcgactgtctaactggctttaagcttgtggaccgtaggctaataaagttgtgttgc
gatttcgagcggagtgagcatgttggaactggagattgctttgtttgtgagcatgaaact
tgtgataagcgaagctgggagtatttgctggaatgcgagtactcggccggtgtgatcacg
agttgttttcaatttagggtgtgcgaatgtaggcgctgttcgctttgttgggcgctagtt
aaattgttaatgcattgccttaaagatagtaacaattggcaggtgcagatggccagcttg
ttgcttaaagctaatgttgactacaaactcgctcagttaattcgcgttgttgttacgacg
ttaaagcgcaagtggctgtttagcgctttggattgtgagtgcgcgcttcgtccattagct
ttattaagatgagcgcttgtatgcgagtcaaagatcagatattacaagcgcttagttgtg
agcgatagcaagtgactagccgcgtggatttttaaaacttgttttcagtactcgtttaac
aaatccagtatagttagagccggtagactggggttgttaatatctgttaacaggtttgac
ttttatagcggttttaaattttcaacgtacgctaggtgatgagttagacacagaatgctt
gatatgtcaacgttgtcggccgcgactcaaactcttacaacgagcattttaaaaatacgc
agtgtggggactggacaaagcgtttcgagcactgttagcgttgttaaagctgatcgctat
agggcggtttcgctggatcaagcaatcggcgacaactctgatctgcatgctgttactgct
gatgatgccgcagtcagtgttaagtgccacgacggtgttgcgagagcatttaagttttta
agaaggttagcgttgctgtcacctagagaagagcgtgttcttagactaagggggtgttcg
ctaaccggctctggacgcagcttggctaaaattggctttgagttgggagtatctaaagag
cgtgtacgccaaatcgagctaacggctggcgccagggttcgcacgcttgatgaggcgatt
gtgccgagtctgttgtgttcgtag
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