Candidatus Hodgkinia cicadicola TETULN: HCTETULN_103
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Entry
HCTETULN_103 CDS
T03202
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
hct
Candidatus Hodgkinia cicadicola TETULN
Pathway
hct03030
DNA replication
Brite
KEGG Orthology (KO) [BR:
hct00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HCTETULN_103 (dnaE)
03430 Mismatch repair
HCTETULN_103 (dnaE)
03440 Homologous recombination
HCTETULN_103 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hct03032
]
HCTETULN_103 (dnaE)
03400 DNA repair and recombination proteins [BR:
hct03400
]
HCTETULN_103 (dnaE)
Enzymes [BR:
hct01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HCTETULN_103 (dnaE)
DNA replication proteins [BR:
hct03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HCTETULN_103 (dnaE)
DNA repair and recombination proteins [BR:
hct03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HCTETULN_103 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DUF648
Motif
Other DBs
NCBI-ProteinID:
AIC63844
LinkDB
All DBs
Position
complement(76376..79318)
Genome browser
AA seq
980 aa
AA seq
DB search
MRVFANLKVHSIYSILESALSIDKIAELTLRHSQRSVCLTDNNLHGALEFCVKCRNVSIQ
PIIALKVLIDDQQALFNALTKPLIATLIVRTERGYTNLLKLINGSADELGHRAITLAQLE
AHSEGLTLLLGEVGGVAWEVYKQFETNAIVAKLDLLRQIVNNNLCFELQRRVFVNQQFEA
IITAYAETHSLLVVATNETFFEAPQDYGVYKALRAIARSHCSSVTSQNYFKSYAQMLTRF
ADVPRALHNCARLCKTCEFYLETRPLTLPTFLSSQTLENGVLYKRLIISLERLFYSVGKV
NKRAYYKRLIGELRIVSRTRYSGYFLMVMDFVLWAKANNILVGPGRGSAAGSLLAYCASI
TNVDPLQHGLLFERFLNAARANPPDIDVDFCHVAREGLIRYVQARYTYANVAQISTFGVL
QLKGAIKDAGRCLQIKFETLNNLCAALPAYSRVRITDSMLLACCAKALIPQHIANELIAT
TAKLVGVYRHVGTHAAGVVISNSPLANQVPVVWDSENKINVAQYNMGWIDSAGLPKFDLL
GLKTLTVVSGVLELLAINRIEPNINFKDEKTYSFISRGLLLATFQLESEGITKHVKHMKP
SSLNDLAALIALYRPGPIQQIKLYSDIKHGRAKRAKIHSKIDSVLDDTYGIIVYQEQVML
IAQALSGYSLIEADELRKAMAKKNRSEMLAHTKRFIDGAVANGVEEQLAAGVFETLMRFA
DYGFNKSHAVAYAMLAYTTAYLKCNFTLEFYAVSLTVETNEANEITDLYYEALKLEVEFA
QPSVQAPYDEFKIVNSVIQFPLSAIKNVTQAAISSIAASKTNRPFASLMDFCCKCDPKLI
TENVLRSLILSGALDCFKLPRDQMISNLKLIQNCIKLKTDINLIAPDYCEPSLETLYNEY
CLIGCFVSENPIDRFTCECQNGFELAVAVAQTDTTLTLLFKTHRLEVSTNIDYPLQLGQV
YACEIVYTRSKPVCKRIRQA
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
ttgcgcgtgttcgctaatttaaaagttcactcaatttactcaattctggaaagcgcatta
agcatcgacaagatcgcagagctaacgcttagacactcgcaacgcagtgtgtgcttaaca
gataacaacttgcacggcgcgttagagttctgtgtgaaatgcagaaacgttagcatacag
ccgattatagcgctcaaggtgctaattgatgaccagcaggcgttgtttaacgcgttaaca
aaacctttaatagccacattaatagtacgcacggagcgcggctacacaaacttgctcaaa
ttaataaatggcagcgcggacgagctcggacatcgcgctataacattagctcagctcgaa
gcgcattcggaaggattaacgttattactcggtgaagtaggcggagtagcctgagaggtg
tacaaacagttcgaaaccaacgctattgttgcaaagcttgatttgttacgccaaattgtt
aacaacaatttgtgctttgaattacaaaggcgtgtgttcgtaaaccaacagtttgaggct
ataataacagcgtatgctgaaacacattcgctgttggtggtagccaccaacgaaacattc
tttgaagcgccccaggactatggtgtgtataaagcgctgcgcgctatagcgcgctcacat
tgttcgagcgttaccagtcagaattatttcaaaagctacgcccagatgttaacgcgtttc
gcggacgtgccgcgcgcgttacacaattgtgcgcggctctgtaaaacgtgcgagttctac
ttagagactcgaccgctaacgttgcccacgtttttaagctcacaaacgcttgagaacggt
gtattgtacaagcgcttaataatctcgctggagcgcctgttttacagcgtaggcaaagtt
aacaagcgcgcgtattacaaacgccttatcggagagcttcgcatcgtgtcgcgcacacgc
tattcgggctatttccttatggtaatggactttgtcttatgagctaaagcaaacaacata
ttagtggggccgggtcgcggctcggccgcaggctcattgctagcatactgcgctagcatt
actaatgtagaccctttgcaacatgggctgttgtttgagcgattcttaaacgcagcgcgg
gctaatccgcccgatatagacgtggacttttgccacgtggcgcgagaaggattaataaga
tatgttcaggcgcgatacacttacgctaacgttgctcaaatttcaacattcggcgtgtta
caattaaagggcgctataaaagatgcgggcagatgtcttcaaattaagttcgagacattg
aacaacttatgcgcagccctgccggcgtattcgcgcgtccgaattaccgactcgatgttg
ttagcgtgctgtgccaaagcgctaataccacagcacattgcaaacgaactgatcgccaca
accgcaaagcttgtgggtgtgtacagacacgtgggcacccacgccgccggcgtggttata
agcaattcgccgttggctaatcaagtgcccgtggtttgagatagcgagaataagatcaat
gtagcccaatacaatatgggctgaatagactcagccggtttgccaaagtttgatttgctc
ggactcaaaacgttaaccgttgttagcggcgtgttggagctgttagcaattaacagaatt
gaaccaaacattaactttaaagacgaaaaaacatacagtttcataagccgaggcttgctg
ttggccacttttcaattggaaagcgagggtataactaaacacgttaagcacatgaaacca
tcaagtttaaatgatctagccgcgcttatagcgctatatagaccgggacctatacagcaa
attaaattgtattccgatataaaacatggtcgcgccaagcgcgccaaaatacacagcaaa
atagacagcgtgctagacgacacatatggcataatagtgtaccaagagcaggtaatgtta
atagctcaagcgctatcaggatattcgctaatcgaagcagacgagttaagaaaggctatg
gcaaagaaaaacagatccgaaatgttagcgcacaccaaaaggtttatcgacggcgccgtt
gcaaacggtgttgaagagcagctggcggcgggagtgtttgagacgttgatgcgctttgca
gactatggctttaacaaatcgcacgctgtggcttacgcaatgctagcgtacacaaccgcg
tatttaaaatgcaactttacgttagaattttacgctgttagcctcacagttgaaacaaac
gaagcaaatgagataacggatttgtactacgaagcgctaaagctcgaagtggaatttgca
cagcctagtgtgcaagcgccttatgacgagttcaaaattgttaacagcgttattcaattt
ccgttaagcgcgattaaaaatgtaacgcaagcagcgattagtagcatagcggcctccaaa
acaaacagaccatttgctagtttaatggacttttgctgtaagtgcgacccaaaactaata
actgaaaacgtgcttagatcgcttatccttagcggtgcgttggactgctttaaactacct
agagaccaaatgatatcaaatttaaaattaatacaaaactgtattaaactcaaaaccgat
atcaatctgatcgcgccagattattgcgagccctcgcttgaaacgctttacaacgagtac
tgtcttatcggctgctttgtctcggaaaaccccatagacagatttacgtgtgaatgccaa
aacggttttgagttagcggtggctgtagcccagacagacaccacattaacgcttctgttt
aaaactcatcgacttgaagtttccactaacattgattatcctttgcaactggggcaagtg
tacgcttgcgagattgtgtacactcgatctaaaccggtgtgtaaacgcattcgtcaagct
tag
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