Hymenobacter cellulosilyticus: MUN79_21120
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Entry
MUN79_21120 CDS
T09398
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hcu
Hymenobacter cellulosilyticus
Brite
KEGG Orthology (KO) [BR:
hcu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hcu03016
]
MUN79_21120
Enzymes [BR:
hcu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
MUN79_21120
Transfer RNA biogenesis [BR:
hcu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
MUN79_21120
Prokaryotic type
tRNA splicing ligases
MUN79_21120
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
tRNA_NucTran2_2
Motif
Other DBs
NCBI-ProteinID:
UOQ71141
UniProt:
A0A8T9Q3Y2
LinkDB
All DBs
Position
complement(4287891..4289324)
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AA seq
477 aa
AA seq
DB search
MITGKDLLNLGLKPGKWFKEALEHINTHGLEGDALQAYLDTVKPAPEIPLLAQSVPFHEN
ISADSAVEQDNIDYVRQSMQLLMRTPTVVAGAIMPDACPAGPLGTIPVGGIVVARNAIHP
GMHSADICCSVMLTNLGHVDPKTVLDAAQQITHFGPGGRPDDQQFALPADIEAEFLANPF
LNSARSLKFAHEHLGTQGDGNHFLYVGISRNTGDTVLVTHHGSRGPGAALYTQGMKVAER
FRQAISPATDPHNAWIPSESEEGQQYWAALQTIRKWTKQNHLCLHEAIGTQLGATVQQRF
WNEHNFVFRDGDLYYHAKGATPLDSKFMPDITGPRIIPLNMAQPILIVEGTTTGNNLGFA
PHGAGRNLSRTRHKYSKIGQTKEELFAAETQGIDARFFFNQIDISELPSAYKDAREVQRQ
ITDFNLATIVDEIRPYGCIMAGDWEQDAPWRKKKLAKEAARLAADDTQTDGSALSEE
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgattaccggtaaagacttattgaacctgggcctgaagcccggcaagtggtttaaagaa
gccctggagcatatcaacacgcacggcctggaaggcgacgcgctgcaggcctacctcgat
acggtgaagcccgccccggaaattccgctactggcccagtccgtgccgtttcacgaaaat
atcagcgccgactcggccgtggagcaggacaacatcgactacgtgcggcagtcgatgcag
ctactcatgcgcacgcccacggtggtagccggcgccatcatgcccgacgcctgcccggct
ggacccctgggcaccattccggtgggcggcatcgtcgtggcccgcaacgccattcacccc
ggcatgcacagcgccgatatctgctgctcggtaatgctgaccaacctgggccatgtcgac
ccgaaaaccgtgctggatgcggcccagcagattacccacttcggtcccggcggccgcccc
gacgaccagcagtttgccctgcccgccgacattgaagccgaattccttgccaacccgttt
ctgaactcggcacgcagcctcaagtttgcccacgagcacctgggcacccagggcgacggc
aaccactttctctatgtgggtatctcgcgcaataccggcgacacggtgctcgtaacccac
cacggttcccgcggccccggtgcggcgctttatacccagggcatgaaggtggccgaacga
tttcgccaggccatttcgcccgccaccgacccgcataacgcctggattcccagcgagtcg
gaggaggggcagcagtactgggcggccctgcaaaccatccggaagtggaccaagcaaaac
cacctgtgcctgcacgaggccattggcactcagctgggcgcgacggtacaacagcggttt
tggaacgagcacaactttgtgtttcgcgacggggacctgtactaccacgccaaaggggcc
accccgctcgattcgaagttcatgcccgacattaccggtccgcgcatcattccgctcaac
atggctcagcctatcctgattgtagaaggcaccaccacgggcaataacctcgggtttgca
ccccacggggccgggcggaacttgagccgcacgcgccataagtacagcaagatcgggcaa
accaaggaagagctgtttgccgccgaaacccagggcatcgacgcccggtttttcttcaac
cagattgacatttccgagctacccagcgcctacaaggatgcccgggaagtgcagcggcag
attaccgatttcaacctggctaccatcgtggacgaaatccggccctacggctgcatcatg
gccggcgactgggagcaggatgcgccctggcgcaaaaagaagctggccaaggaagccgcc
cgcctggccgccgacgatacccagaccgacggctcggcactgtcggaggagtag
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