Hymenobacter canadensis: O3303_05025
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Entry
O3303_05025 CDS
T09156
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
hcw
Hymenobacter canadensis
Brite
KEGG Orthology (KO) [BR:
hcw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hcw03032
]
O3303_05025
03400 DNA repair and recombination proteins [BR:
hcw03400
]
O3303_05025
Enzymes [BR:
hcw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
O3303_05025
DNA replication proteins [BR:
hcw03032
]
Prokaryotic type
DNA Topoisomerases
O3303_05025
DNA repair and recombination proteins [BR:
hcw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
O3303_05025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
WBA42926
LinkDB
All DBs
Position
1163489..1164610
Genome browser
AA seq
373 aa
AA seq
DB search
MSATTARPKTKKKHLPPLQEAHELYKDPARQAELAGLRYFTDTKPGLTRKATRAGNFSYH
TVAGEKISDEKVLTRIQGFVIPPAWTEVWISPSANTHLQVTGRDAKGRKQYLYHPAWDQA
RSLTKFSRLRAFGEKLAELRAQMHKDLARPTLDKPKVMALVLMLMDKSFIRVGNREYAEK
NKTYGLTTLRDKHVQVSGADVRFAFVGKKGVAHDLTLHDRKLAKLVQKCKEIPGQHLFQY
YTPDGHRQELESGDVNEYLQQVTGLKLSAKDFRTWGGTVKMVECLERVLDEEPDFPKPKT
LKRALKDVAHDLGNTPTVCSKYYIHPQVMELFNSDKLIDYLRRHDADPTENDLLTPTEHM
VLDMLAELEGKGK
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
atgtctgctaccactgcccgccccaaaaccaagaaaaagcacctgccgccgctgcaggag
gcccatgagctctacaaagaccccgcccggcaggctgagctggccggcctgcgctacttc
accgataccaagccgggcctgacacgcaaagccacccgcgccggcaacttcagctaccac
accgtagcgggcgagaaaatcagcgacgaaaaagtgctgactcgcatccagggcttcgtg
attccgccggcctggacggaagtctggatttcgccctcggccaacacgcacctgcaggtt
acgggccgcgacgccaagggccgcaagcagtacctctaccacccggcctgggaccaggcc
cgcagcctcaccaagttcagccgcctgcgcgccttcggcgagaagctggccgagctgcgc
gcccagatgcacaaagacctggcccggcccacgctggacaagcccaaggtgatggccctg
gtactgatgctgatggacaagtcgtttatccgggtcggcaaccgcgagtacgctgagaaa
aacaaaacctacggcctcaccaccctccgcgacaagcacgtgcaggtgagcggggccgac
gtgcggtttgcgtttgtgggcaagaaaggcgtggcccacgacctcacgctgcacgaccgt
aagctggccaagctggtgcagaagtgcaaggaaattccgggccagcatctgttccagtac
tacacccccgacggccaccggcaggagctggaatcgggcgacgtgaacgagtatctgcag
caagtaacgggcctcaagctctcagccaaggacttccgcacctggggcggcaccgtgaaa
atggtggagtgcctagagcgggtgctggatgaggagcccgacttcccgaaacccaaaacg
ctgaagcgcgccctcaaggacgtggcccacgacctggggaatacgcctacggtgtgctcc
aagtactacatccacccgcaggtgatggagctgttcaactctgataagctcatcgactac
ctgcgccgccacgatgccgaccccaccgaaaatgacctgctgacccctacggagcacatg
gtgctggatatgctggcggagctggagggaaaagggaagtaa
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