Hymenobacter canadensis: O3303_07095
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Entry
O3303_07095 CDS
T09156
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hcw
Hymenobacter canadensis
Pathway
hcw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hcw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
O3303_07095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hcw03019
]
O3303_07095
Enzymes [BR:
hcw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
O3303_07095
Messenger RNA biogenesis [BR:
hcw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
O3303_07095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
AAA_22
AAA_30
UvrD-helicase
Utp25_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
WBA43847
UniProt:
A0ABY7LTX0
LinkDB
All DBs
Position
1632546..1633997
Genome browser
AA seq
483 aa
AA seq
DB search
MIFDDLNLIEPILRALHEEGYTTPTPIQQQAIPQVLEGHDLLGVAQTGTGKTAAFTVPIL
QILHQTAQVERHAPGRIRCLVLTPTRELAIQIGESFKAYGRHLPKLRSTVIFGGVGQHPQ
VQILKRGVEVLIATPGRLLDLMNQGFVDLRHVEVFVLDEADRMLDMGFIHDIKRILPKLP
ASRQTLFFSATMPGQIQELASTILRPNPVKVAVTPVSSTADTVTQGVYLVDKNDKPALLE
HVLQNQEIRRVLVFTRTKHGADKVVKTLEKANIPAEAIHGNKSQNHRQRALSSFKAGTTR
VLVATDIAARGIDVDELTHVINYEVPNEPETYVHRIGRTGRAGAFGTAFTFVEDEERAYL
QDIQKLIRRQIDLIEDHPYTTRSVAPVLLHGGAPIKRPKGPAGRPARPGREGGGGGQGGG
RAPRQGQQSGAPRGGQERGASGGHRSSSAASSRPAGERTPGSSQGSGSGQRRFRGGSGGG
RPQ
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgatcttcgacgaccttaaccttattgagcctatcctgcgtgccctgcacgaggaaggc
tacactacccccacgcctattcagcagcaagccattccgcaagtgctggaaggccacgac
ctgctgggtgtcgcccagaccggcaccggcaaaaccgccgctttcaccgttccgattctg
cagattctgcaccagacggctcaggtagaacgccacgcgcccggccgcatccgttgcctg
gtgctcacgcctacccgcgagctggccatccagatcggggaaagcttcaaggcctatggc
cgccatctgcccaagctgcgctctaccgtcatcttcggtggcgtgggccagcacccgcag
gtgcagattctcaagcgcggcgtggaagtgctcattgccactcccggccgcctgctcgac
cttatgaaccagggcttcgtggatctgcgccacgtggaagtatttgtgctggatgaagct
gaccgcatgctcgacatgggtttcatccacgacatcaagcgcattctgcccaagctgccg
gcctcgcgccagacgctgttcttctcggccaccatgcccggccagattcaggagctggcc
tccaccatcctgcgccccaacccggtgaaagtggccgtaacgcccgtttcgagcactgct
gacacggtaacgcagggcgtgtatctggtagacaagaacgacaagccggccctgctggag
cacgtgctgcaaaaccaggaaatccgccgggtgctggtgttcacgcgcaccaagcacggc
gccgataaggtggtgaagaccttggagaaggccaacattccggccgaagccatccatggc
aacaaaagccagaaccaccgccagcgggccctcagcagcttcaaggccggcaccacccgc
gtgctggtcgctaccgacattgccgcccgcggcatcgacgtcgatgagctgacccacgtt
atcaactacgaggtacccaacgagcccgaaacctacgtgcaccgtatcggccggacgggc
cgcgccggggccttcggcacggccttcacgtttgtggaagacgaggagcgcgcctacctg
caggatatccagaagctgattcgtcggcagatcgacctgattgaggatcacccttacacc
acccgctcggtggcgccggtgctgttgcacggcggtgcccccatcaagcgcccgaaaggc
cccgccggccgcccagcccgcccgggccgcgaaggtggtggcggaggccagggtggcggc
cgcgcgccgcgccagggccagcagagcggcgccccccgcggcggccaggaacgcggcgcc
agcggtggccaccgcagcagctccgcggcttcgtcgcggcccgctggtgagcggacgccc
ggcagcagccagggctccggctcgggccagcggcgcttccgcggcggcagcggcggcgga
cgcccgcagtag
DBGET
integrated database retrieval system
