Hymenobacter canadensis: O3303_07220
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Entry
O3303_07220 CDS
T09156
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hcw
Hymenobacter canadensis
Pathway
hcw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hcw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
O3303_07220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hcw03019
]
O3303_07220
03009 Ribosome biogenesis [BR:
hcw03009
]
O3303_07220
Enzymes [BR:
hcw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
O3303_07220
Messenger RNA biogenesis [BR:
hcw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
O3303_07220
Ribosome biogenesis [BR:
hcw03009
]
Prokaryotic type
rRNA helicases
O3303_07220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WBA43349
UniProt:
A0ABY7LU20
LinkDB
All DBs
Position
complement(1659777..1661702)
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AA seq
641 aa
AA seq
DB search
MENETVKTKFSELTLSEEMQRAITEVGYEEASPIQAAGIPVLLAGRDVIGQAQTGTGKTA
AFSIPAIERVDTDSREVQCLVLCPTRELAVQVSGEIQKLGKYKRGLAVVPIYGGSSYDRQ
FRALERGVQIVIGTPGRVMDHIERGTLKLEHCKMIILDEADEMLDMGFRDDIETVLKKMP
EDRQTVFFSATMSKPIMEMTKRYQKDPQIVKVNHQEMTVTNIEQSYFEVRGPQKKDVLTR
LIDMYNIKSGIVFANTKRMVDEIVGDLQAKGYFAEGLHGDMGQQQRQNTLDKFRKGTLEI
LVATDVAARGIDVDNVEVVVNYDLPADEEYYVHRIGRTGRAGKQGKAFTFVSGRDIYKLR
DIMRFTKANIKQERVPSFEDVSEVKTTLMLNSIKEVIVKGNLDKYIARVQRLIDQEQEEA
VTSLDVAAALLKMTMKEDKRAQESLDASRTQGAARAGFTRLFVTMGKKDRLHPRDIVDLI
AENTSLTASKVGDIALYDKFSFVEIPNEFVEEVVSQLGRSSIQGRPVAFNIATPRQEGDA
QQEGGNRGGFGGGSERPRRAPGGFGGGERREGGSSYGGGNRREGGSSYGGNRGGGSYGGG
ERREGGSSYGGNRGGGSYGGGNRREGGSSYGGGYKGKRDDS
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atggaaaacgaaaccgttaagaccaagttcagcgagctgaccctctctgaagaaatgcag
cgtgccatcaccgaagttggctacgaagaagcatcccccatccaggccgccggtattccg
gtcctgctcgccggccgcgacgtaatcggccaggcccagaccggcaccggtaaaactgcc
gccttctctatccccgccattgagcgtgtcgataccgactcgcgcgaagtgcagtgcctc
gtgctctgccccacccgcgagctggcggtgcaggtttcaggcgaaatccagaaactgggc
aaatacaagcgtggtctggccgttgtgcccatctacggtggctcttcctacgaccgtcag
ttccgcgctctggagcgtggcgtgcagatcgtaatcggtactcccggccgcgtaatggac
cacatcgagcgtggcacgctcaagctggagcattgcaaaatgatcatcctcgatgaggcc
gacgaaatgctcgacatgggcttccgcgacgacatcgagacggtgctcaagaaaatgcct
gaagaccgccagacggtgttcttctcggctaccatgagcaagccgatcatggagatgacc
aagcgctaccagaaggatccgcagatcgtgaaggtaaaccatcaggaaatgacggttacc
aacatcgagcagagctactttgaggtgcgcggtccgcagaaaaaagacgtgctgacccgt
ctgatcgacatgtacaacatcaagtcgggcatcgtcttcgccaacacgaagcgcatggtg
gacgagattgtaggcgacctgcaggctaaaggctacttcgccgaaggtctgcacggcgac
atgggccagcagcagcgccagaacacgctcgataaattccgcaaaggcaccctcgaaatc
ctggtagctaccgacgtagccgcccgtggcatcgacgtggataacgtggaagtagtagtc
aactacgacctgcctgccgacgaggaatactacgtgcaccgcatcggccgcaccggccgc
gccggcaagcagggcaaagccttcaccttcgtgagcggccgcgacatctacaagctgcgc
gacatcatgcgcttcaccaaagccaacatcaagcaggagcgcgtgccgtccttcgaagat
gtgtcggaggtgaaaaccaccctcatgctcaactccattaaggaggtgattgtgaagggt
aacctcgacaagtacattgcccgcgtgcaacgcctcatcgatcaggagcaggaagaagcc
gttacgtcgcttgacgtagctgccgctttgctgaagatgacgatgaaggaagacaagcgc
gcccaggaaagcctcgatgccagccgtacgcagggcgccgcccgtgccggcttcacccgt
ctgttcgtgacgatgggcaagaaggaccgtctgcatccccgcgacatcgtggacctgatt
gccgaaaacaccagcctcacggccagcaaagtcggtgacattgccctctacgacaagttc
agcttcgtggaaatcccgaatgagttcgtggaagaagtggtgagccagctcggccgcagc
tccatccagggtcgtccggtggccttcaacattgctacgccgcgccaggaaggtgatgcg
cagcaggaaggcggtaaccgcggtggcttcggcggcggcagcgagcgtcctcgtcgggcc
ccaggtgggttcggtggtggtgagcgtcgcgaaggtggcagcagctacggcggcggcaat
cgtcgcgaaggtggcagctcctacggcggcaaccgcggtggcggtagctacggtggtggc
gagcgtcgggaaggcggcagcagctacggcggcaaccgcggcggcggctcctacggcggt
ggcaaccgccgcgagggtggcagcagctacggcggcggctacaaaggcaagcgtgacgac
agctaa
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