Hymenobacter canadensis: O3303_07915
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Entry
O3303_07915 CDS
T09156
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hcw
Hymenobacter canadensis
Brite
KEGG Orthology (KO) [BR:
hcw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hcw03016
]
O3303_07915
Enzymes [BR:
hcw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
O3303_07915
Transfer RNA biogenesis [BR:
hcw03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
O3303_07915
Prokaryotic type
tRNA splicing ligases
O3303_07915
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
WBA43483
UniProt:
A0ABY7LSU0
LinkDB
All DBs
Position
complement(1834481..1835881)
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AA seq
466 aa
AA seq
DB search
MASQLRGNDLRQLGFPEGRAIGLALAQLQRKHLKKLSQTDQLALLTALLANPTDFLIDLD
WSHTAAALLPAPSRHIALTERKSYAVFGAEHIEQGAIHQMETAMKLPVTMAGALMPDAHH
GYGLPIGGVLATDNAVIPYAVGVDIGCRMALSVFALPPKFLEQRVQELRKLLLEHTRFGN
KQGFVRGQKLDHAVLERPEFRDIGFLRNKQGPAAEHIGTSGGGNHFVEWGVVDILDPTNE
LGVPVGQYLGLLSHSGSRGLGASVANHYTKLAKDVCQLPAEAQNLAWLSLESEAGQEYWA
AMNLAGDYASACHHQIHQRLAKALGERPLAKVENHHNFAWKERLADGRDAIVHRKGATPA
GAGVLGIIPGSMTAPGFIVRGRGEAASLSSASHGAGRAMSRTRAKQELGEAEVRRYLQQH
GIELIGGGLDEAPQAYKDIRAVMQSQTELVDVLGSFTPRIVRMEGA
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atggcctcacaattacgtggcaacgacttgcgccagctcgggtttcccgagggccgggct
attggcctggcgctggcccagctgcagcgcaagcacctcaaaaaactctctcaaaccgac
cagttggccctgctcacggccctgctggcaaaccccactgacttcctcatcgacctcgac
tggagccatacggctgccgcgctgctgcccgcgcccagccgccatattgccctcaccgag
cggaaaagctacgccgtcttcggggccgagcacatcgagcagggtgccatccaccagatg
gaaacggccatgaaactgcccgtaaccatggccggcgccctcatgcccgatgcccaccac
ggctacggcctgcccatcggcggggtgctggccaccgacaacgccgtgattccctacgcc
gtgggcgtggacattgggtgccggatggcgctgtcggtgtttgcgctgccgcccaagttt
ctggagcagcgggtgcaggagctgcgcaagctgctgctggagcacacgcggttcggcaac
aagcagggcttcgtgcgcggccagaagctcgaccacgccgtgctggagcgtcccgagttc
cgcgacataggcttcctgcgcaacaagcagggcccggccgccgagcatatcggcacgtcc
ggcggcggcaatcacttcgtggagtggggcgtggtggatatcctcgaccctaccaatgag
ctgggcgtgccggtgggccagtacctggggctgctgtcgcacagcggctcgcgggggctg
ggcgccagcgtggccaaccactacaccaagctcgccaaagacgtctgccagctgcccgcc
gaagcccagaatctggcttggctgtcgctggaaagtgaggccggacaggaatactgggcc
gccatgaatctggccggtgactacgcctcggcctgccaccaccagattcatcagcgcttg
gccaaagccctgggtgagcggcctctggcgaaggtggaaaaccaccacaacttcgcctgg
aaagaacggctggctgatggccgtgatgccattgtgcaccgcaagggtgccacgccggcc
ggggccggggtgcttggcatcattcccggctccatgacggctcccggctttattgtgcgg
gggcggggcgaagcggcctcgctgtcgtcggcgtcgcatggggcggggcgggcaatgtcc
cggacccgggccaagcaggagctgggcgaagcggaggtgcggcgctatctgcagcagcac
ggcatcgaactgattggcggcggcctcgatgaagccccgcaggcctacaaagacatccgg
gccgtgatgcaaagccagaccgagctggtggatgtgctgggctctttcacgccgcgcatt
gtgcggatggaaggtgcgtag
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