Hymenobacter canadensis: O3303_08260
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Entry
O3303_08260 CDS
T09156
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
hcw
Hymenobacter canadensis
Brite
KEGG Orthology (KO) [BR:
hcw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
hcw03009
]
O3303_08260 (rlmD)
Enzymes [BR:
hcw01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
O3303_08260 (rlmD)
Ribosome biogenesis [BR:
hcw03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
O3303_08260 (rlmD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_15
TRAM
MTS
Cons_hypoth95
TRM5-TYW2_MTfase
PrmA
Motif
Other DBs
NCBI-ProteinID:
WBA43853
UniProt:
A0ABY7LY26
LinkDB
All DBs
Position
1921265..1922614
Genome browser
AA seq
449 aa
AA seq
DB search
MVAEGKCLVRRENLVIFVTQVAPGDVVDLRVTKAKKNFLEAVPTHFHKYSELRVQPFCEH
FGTCGGCKWQHLGYETQLQFKHQQVADTLQRIGKVALPEILPIQASPDQTYYRNKLEYTF
SHNGWLTNEQIASGHNYERRVLGFHTPGRFDKILDINHCWLQPDPSNQIRLAVRDYALEH
DLPFNNLVTQEGFLRNLIIRTANTGDLMVILQCYYAHDALIPLLDFLHERFPQITSLNYV
LNDKGNETFHDLEVVCYQGEPHIHEEMEGLRFRVGPKSFYQTNSEGAFNLYKITRDFAQL
TGSELVYDLYTGAGTIANFVARQAKHVVGVEYVESAVKDAYINSEINGTTNTEFYAGDMK
DVLNAEFIQKHGRPDVVITDPPRAGMHPDVVARLLEMRAPRIVYVSCNPGTQARDLELLD
EAYKVVKVQPVDMFPHTHHVENVVLLELR
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atggtggccgagggcaagtgcctggtgcgccgcgagaacctggtcatatttgtgacgcaa
gtggcccccggcgacgtggtggatctgcgcgtgaccaaggccaaaaagaacttcctggag
gccgtgcccacgcacttccacaagtattccgagctgcgagtgcagcccttctgcgagcat
tttggcacctgcgggggctgcaaatggcagcacctgggctacgaaacccagctccagttc
aaacatcagcaggtggccgacaccctgcagcgcatcggcaaggtagccctgcccgaaatc
ctgccgattcaggcctcccccgaccagacctactaccgcaacaagctggagtacaccttc
agccacaacggctggctgaccaacgagcagattgccagcggccacaactacgagcggcgc
gtactgggcttccacacccccggccgcttcgataagattctcgacatcaaccactgctgg
ctgcagcccgaccccagcaaccagatccggctggccgtgcgcgactacgccctggagcac
gacctgcccttcaacaaccttgtcacccaggaaggcttcctgcgtaacctcatcatccgg
acggccaacaccggcgacctgatggtgattctgcagtgctactacgcccacgacgcactg
attccgctgctggatttcctgcacgagcggtttccgcaaatcacctccctcaactacgtg
ctcaacgacaagggaaacgaaaccttccacgacctggaggtggtgtgctaccagggcgag
ccgcacattcacgaggaaatggaaggcctgcgcttccgcgtcggcccgaaatccttctac
cagaccaactcagagggcgccttcaacctctacaaaatcacccgcgacttcgcccaactc
accggctcggagctggtgtatgacctctacaccggcgccggcaccatcgccaacttcgtg
gcccggcaggcgaaacatgtagtgggcgtggagtatgtggaatcggccgtgaaggacgcc
tacatcaactccgaaatcaacggcaccaccaacaccgagttctacgccggcgacatgaag
gacgtgctcaacgccgagttcatccagaagcacggccgccccgacgtggtcatcactgac
ccgccccgcgccggcatgcaccccgacgtagtggctcgcctcctcgaaatgcgcgccccc
cgcatcgtctacgtcagctgcaaccccggcacccaggcccgcgacctggagctgctggac
gaagcgtataaagtagtaaaagtgcagcccgtggacatgttcccccacacccaccacgtg
gagaatgtggtactgcttgagttgcggtaa
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