Hymenobacter canadensis: O3303_10930
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Entry
O3303_10930 CDS
T09156
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
hcw
Hymenobacter canadensis
Pathway
hcw03030
DNA replication
hcw03430
Mismatch repair
hcw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hcw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
O3303_10930 (dnaE)
03430 Mismatch repair
O3303_10930 (dnaE)
03440 Homologous recombination
O3303_10930 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hcw03032
]
O3303_10930 (dnaE)
03400 DNA repair and recombination proteins [BR:
hcw03400
]
O3303_10930 (dnaE)
Enzymes [BR:
hcw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
O3303_10930 (dnaE)
DNA replication proteins [BR:
hcw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
O3303_10930 (dnaE)
DNA repair and recombination proteins [BR:
hcw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
O3303_10930 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Hpt
Motif
Other DBs
NCBI-ProteinID:
WBA40345
UniProt:
A0ABY7LMC4
LinkDB
All DBs
Position
2556137..2559820
Genome browser
AA seq
1227 aa
AA seq
DB search
MPVFSHLHSHTQYSLLDGQASISALMKKAQADGMPAVALTDHGNMFGAFNFVAEANKYNV
KPIVGCEFYMVEDRHKKAFSREKGERDKRYHQLLLAKDQDGYHNLSKLCSMSFIEGVYSK
FPRIDKELLLKYHKGLIATSCCIGAEIPQAILFQSEAKAEELLKWWLDVFEDDYYIEIQR
HGLMNFDGTGKSQEDVNQVLLGLAKKYNVKVICTNDSHYVEQTDFAPHDILLCVNTGEEH
SIPVGDFQTQYFRLISQDNKVHYDHLDNLRPLAGQDAHIRRQLQRIDEEAQSPKPRARFG
FANDQFYFKNQAEMNALFADVPESVDNTNEIVDKITPPKLQRDILLPNFPLPPEHPTADA
FLRHLTYKGAFEGPKRRYSDRTPEIEERLDYELRVIETMGFAGYFLITQDFINHGRNNGV
AIGPGRGSAAGSAVAYCVGITNIDPIKYSLLFERFLNPERVSMPDIDIDFDDVNRQRVID
YVVDKYGKTQVAQIITFGTMAAKSSIKDVSRAMELPLQLANDLVKMVPEQVGTTLAKAFA
ENPELDYILRDDAPDNLRGQILRLAHKLEGSVRNTGIHAAGVIIAPDDITKYIPVSTSKD
SDLLITQFDGKVIESAGMLKMDFLGLKTLTIIVDAINLIERNHGVKIDIDEIPIDDQKTY
ELYQRGDTIGTFQFESEGMRMYLKDLKPTNIEDLIAMNALYRPGPMQFIPNFINRKHGRE
EVDYPHELLEPILNYSQGIMVYQEQIMQTAQILAGYSLGGADLLRRAMGKKDMKKMALER
EKFCEGAEKLHGIKAKKANEVFDVMEKFAAYGFNRSHSAAYSVVAYQTGYLKAHYPAEYM
AAVLTNNMGDIKKVTFFIEEARKQGVAVLGPDVNESILKFNVNAQGQIRFGMAAMKGSGE
AAVEEIVKEREKGGHYADIFDFARRINLRAVNKKTFESMAQAGAFDSFDRYHRRQFLEAP
TGDQNLIEKAMKVGQQHQAAKESAQQSLFGGGGGEMAIPMPKIQDLEPWSPTEKLRREKE
IVGFYLSGHPLDDFKLEIDSYCTCGLDKIETYKNRDVTVAGLISNVLFKTTKTGQPFVSF
NVEDYESSLNLALFRDDYSKFSALINPRNYDKEQVPPMFIRGKYAQRFRDSDQFEFKIMT
MEPLFNVAEKLANGVRVQLDLRTITEPFMDRFMEAVESATGSKKLEIKFAEPHEHLAVDT
YSRRYRIEPKEFIRKMREMEIDACQLI
NT seq
3684 nt
NT seq
+upstream
nt +downstream
nt
atgcccgttttctcgcacctccactcgcacacccaatattcgcttctcgacggtcaggcc
agcatttcggccctgatgaagaaggcccaggccgacggcatgccggccgtggccctcacc
gaccacggcaacatgtttggggcgttcaacttcgtggccgaggccaacaagtacaacgtg
aagccgattgtgggctgcgagttctacatggtggaagaccgccacaaaaaggccttcagc
cgcgagaaaggcgagcgggacaagcgctaccaccagctgctgctagccaaggaccaggac
ggctaccacaacctgagcaagctctgctcgatgagcttcatcgagggcgtgtacagcaaa
ttcccgcgcattgacaaggagctgctgctcaagtaccacaagggcctgattgccacttcc
tgctgcatcggggccgagattccgcaggccatcctgtttcagagcgaggccaaggccgag
gagctgctcaagtggtggctcgacgtgttcgaggacgactactacatcgagattcagcgc
cacgggctgatgaacttcgacggcaccggcaaaagccaggaagacgtgaaccaggtgctg
ctgggtttggcgaagaagtacaacgtgaaggttatctgcaccaacgactcgcactacgtg
gagcagactgacttcgcgccccacgatattctgctgtgcgtgaacaccggcgaggagcac
agcatcccggtcggcgacttccagacgcagtattttcgcctgatttcccaggacaacaaa
gttcactacgaccacctcgacaacctgcgccccctcgccggccaggatgctcacatccgc
cgccagctccagcgcatcgacgaggaagcgcagtcgcccaagccccgggcccgcttcggc
ttcgccaacgaccagttctactttaagaaccaggccgagatgaacgcgctgttcgccgac
gtgcccgagagcgtggacaacaccaacgaaatcgtggacaaaatcacgccgcccaagctg
cagcgcgacattctgctccccaacttccccctgccccccgagcacccgacggccgacgcc
tttttgcgccacctcacctacaagggagctttcgaaggcccgaagcgccgctactccgac
cgcacccccgaaatcgaggagcgcctcgactacgagctgcgcgtgattgagacgatgggc
tttgccggctacttcctcatcacccaggacttcatcaaccacggccgcaacaatggcgta
gccatcgggccgggccggggctcggcggcgggctcggcggtggcctactgcgtgggcatc
accaacatcgacccgattaagtactccctgctgttcgagcggttcctgaacccggagcgc
gtgtccatgcccgatatcgacatcgacttcgacgacgtgaaccgccagcgcgtcatcgac
tatgtggtggacaagtacggcaaaacccaggtggcccagatcatcaccttcggcacgatg
gccgccaaatcgtccattaaagacgtgtcgcgggccatggagctgccgttgcagcttgca
aacgacctggtgaagatggtgcccgagcaagttgggacaaccttagccaaggccttcgcc
gaaaaccccgaactggattacatcctccgcgacgacgcccccgacaacctgcgcggccag
attctgcgcctggcccacaagctggaaggctcggtgcgcaataccggcatccacgccgcc
ggcgtcatcatcgcccccgacgacatcaccaagtacattcccgtttccacctccaaggat
tcggacctgctgattacgcagttcgatggcaaggtgattgagagtgccgggatgctgaag
atggactttctgggcctgaaaaccctgaccatcatcgtcgatgccatcaacctgattgag
cgcaaccacggcgtcaaaatcgacatcgacgaaatcccgattgacgaccagaagacctac
gagctctaccagcgcggcgacaccatcggcacgttccagttcgagagcgagggcatgcgc
atgtacctcaaagacctcaagcccaccaacatcgaggacctgattgccatgaacgccctg
taccggcccggcccgatgcagttcatcccgaacttcatcaaccgcaagcacggccgcgag
gaggtggattacccccacgagctgctggagcccatcctgaactactcccagggcatcatg
gtgtaccaggagcagatcatgcagacggcccagattctggccggctattccctgggcggc
gccgatttgctgcgccgggccatggggaaaaaggacatgaagaagatggccctggagcgg
gagaagttctgcgagggcgccgagaagctgcacggcatcaaggccaagaaggccaacgag
gtgttcgacgtgatggagaaatttgcagcctacggcttcaaccgctcccactccgccgcc
tactcggtagtggcctaccagaccggctacctcaaggcccactaccccgccgagtacatg
gccgccgtactcaccaacaacatgggcgacatcaagaaggtgacgtttttcattgaggaa
gcccgcaagcagggcgtggccgtgctcggtcccgatgtcaacgaatccatcctgaagttc
aacgtaaacgcccagggtcagatccgcttcggcatggccgccatgaagggttcgggcgag
gcagccgtggaggaaatcgtgaaggagcgggagaaaggcggccactacgccgacatcttt
gactttgcgcgccgcataaacctgcgggccgtgaacaagaaaaccttcgagagcatggcc
caggccggcgccttcgactcgtttgaccgctaccaccgccgtcagttcctggaagccccc
accggcgaccagaacctcatcgagaaggccatgaaggtgggccagcagcaccaagccgcc
aaggaatcggcccagcagagcctttttggcggcgggggcggcgaaatggccatcccgatg
cccaaaatccaggacctggagccctggagccccaccgagaagctgcgccgcgaaaaggaa
atcgtgggtttctacctctccggccacccgctggacgacttcaagctcgaaatcgactcc
tactgcacctgcgggctcgacaagattgagacctacaaaaaccgcgacgtgaccgtggcc
ggcctgatttccaacgtgctgttcaaaactaccaagaccggccagcccttcgtgagcttc
aacgtggaagactacgagagcagcctcaacctggctttgttccgcgacgactactccaag
ttctcggccctcatcaacccccgcaactacgataaggagcaggtgccgcccatgttcatc
cgcggcaaatacgcccagcgcttccgcgactccgaccagttcgagttcaagatcatgacc
atggagccgctgttcaacgtggccgagaagctcgccaacggcgtgcgcgtgcaactggat
ttgcgcaccatcacggagcccttcatggaccgcttcatggaagccgtggaaagcgccacc
ggctccaaaaagctcgaaatcaagttcgccgaaccccacgagcacttggccgtggacacc
tactcccgccgctaccgcatcgagcccaaagagttcatccgcaaaatgcgcgaaatggaa
atcgacgcctgtcagctgatttag
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integrated database retrieval system
